Detailed information    

insolico Bioinformatically predicted

Overview


Name   pilP   Type   Machinery gene
Locus tag   A9E83_RS04590 Genome accession   NZ_CP015938
Coordinates   1013563..1014150 (+) Length   195 a.a.
NCBI ID   WP_010946665.1    Uniprot ID   Q5ZX03
Organism   Legionella pneumophila strain C7_O     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context


Location: 1008563..1019150
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  A9E83_RS04570 (A9E83_04570) ravI 1009910..1010920 (-) 1011 WP_010946661.1 Dot/Icm T4SS effector RavI -
  A9E83_RS04575 (A9E83_04575) pilM 1011337..1012401 (+) 1065 WP_010946662.1 type IV pilus assembly protein PilM Machinery gene
  A9E83_RS04580 (A9E83_04580) pilN 1012405..1012953 (+) 549 WP_010946663.1 PilN domain-containing protein Machinery gene
  A9E83_RS04585 (A9E83_04585) pilO 1012967..1013566 (+) 600 WP_014841277.1 type 4a pilus biogenesis protein PilO Machinery gene
  A9E83_RS04590 (A9E83_04590) pilP 1013563..1014150 (+) 588 WP_010946665.1 pilus assembly protein PilP Machinery gene
  A9E83_RS04595 (A9E83_04595) pilQ 1014154..1016250 (+) 2097 WP_010946666.1 type IV pilus secretin PilQ Machinery gene
  A9E83_RS04600 (A9E83_04600) aroK 1016702..1017223 (+) 522 WP_027219629.1 shikimate kinase AroK -
  A9E83_RS04605 (A9E83_04605) aroB 1017210..1018319 (+) 1110 WP_010946668.1 3-dehydroquinate synthase -

Sequence


Protein


Download         Length: 195 a.a.        Molecular weight: 22343.91 Da        Isoelectric Point: 10.3617

>NTDB_id=184168 A9E83_RS04590 WP_010946665.1 1013563..1014150(+) (pilP) [Legionella pneumophila strain C7_O]
MIIKNNQTLLILGFFGNSLRTLLTSENFRKSLFTALLVLLLSACSGDNSDLVKYINEVKSRPGRPIEPIPKFAPLPIFRF
PENDNRRNPFKPIDQKKRNDIYAPDKKRPKQPLESFPLDALKFVGTLKKDNEIWALIKQPDGQISRVRVGDYMGQNYGRI
ILIKNDLIKLEETVQKSGTWEKQSTTINLDTGKQE

Nucleotide


Download         Length: 588 bp        

>NTDB_id=184168 A9E83_RS04590 WP_010946665.1 1013563..1014150(+) (pilP) [Legionella pneumophila strain C7_O]
ATGATAATTAAAAATAACCAGACTCTTCTTATATTAGGCTTTTTCGGAAATTCTCTGCGCACTTTACTCACCTCAGAGAA
TTTCCGAAAAAGCCTATTCACAGCGTTATTGGTTCTATTACTTAGTGCCTGCTCTGGTGATAACAGTGACCTTGTTAAGT
ACATCAACGAAGTGAAATCAAGACCAGGAAGACCTATCGAGCCTATTCCCAAATTCGCCCCTTTGCCAATTTTTAGATTT
CCAGAAAACGACAATAGGCGAAATCCATTCAAGCCTATTGATCAAAAAAAGAGAAATGATATTTATGCCCCAGATAAAAA
AAGGCCTAAGCAGCCTTTGGAATCTTTTCCTCTGGATGCTTTAAAATTTGTAGGTACTTTAAAAAAAGACAATGAAATCT
GGGCTCTGATTAAACAACCTGACGGTCAGATTAGCCGTGTTAGGGTTGGAGATTACATGGGACAAAATTATGGACGTATT
ATTTTGATTAAAAATGATCTCATTAAATTGGAAGAAACTGTACAGAAATCAGGAACGTGGGAAAAACAGTCCACCACAAT
TAATTTGGATACTGGCAAGCAGGAGTGA

Domains


Predicted by InterproScan.

(50-189)


Secondary structure


Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure


Source ID Structure
  AlphaFold DB Q5ZX03

Transmembrane helices


Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.



Visualization of predicted probability:


Similar proteins


Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilP Legionella pneumophila strain ERS1305867

96.923

100

0.969


Multiple sequence alignment