Detailed information    

insolico Bioinformatically predicted

Overview

Name   vraR   Type   Regulator
Locus tag   B4U39_RS30450 Genome accession   NZ_CP020039
Coordinates   6647194..6647823 (-) Length   209 a.a.
NCBI ID   WP_030390325.1    Uniprot ID   -
Organism   Streptomyces sp. 3211 isolate 3     
Function   repress expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 6642194..6652823
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  B4U39_RS30430 - 6642312..6642929 (-) 618 WP_079406591.1 nucleotidyltransferase family protein -
  B4U39_RS30435 - 6642890..6643150 (-) 261 WP_079406592.1 hypothetical protein -
  B4U39_RS30440 - 6643239..6644726 (+) 1488 WP_079406593.1 PLP-dependent aminotransferase family protein -
  B4U39_RS30445 - 6644846..6647197 (+) 2352 WP_079406594.1 WD40 repeat domain-containing protein -
  B4U39_RS30450 vraR 6647194..6647823 (-) 630 WP_030390325.1 response regulator transcription factor Regulator
  B4U39_RS30455 - 6647820..6649100 (-) 1281 WP_079406595.1 sensor histidine kinase -
  B4U39_RS30460 - 6649235..6650320 (+) 1086 WP_079408104.1 ABC transporter permease -
  B4U39_RS30465 - 6650317..6651009 (+) 693 WP_079406596.1 ABC transporter ATP-binding protein -
  B4U39_RS30470 - 6651102..6651905 (-) 804 WP_030390329.1 IclR family transcriptional regulator -

Sequence

Protein


Download         Length: 209 a.a.        Molecular weight: 21979.32 Da        Isoelectric Point: 5.6743

>NTDB_id=184166 B4U39_RS30450 WP_030390325.1 6647194..6647823(-) (vraR) [Streptomyces sp. 3211 isolate 3]
MTIRLLLADDHPVVRAGLRAVLDTEPDFAVVAEAATAERAVELAAGEPVDVVLMDLQFGRGMHGSEATALITARPGAPRV
LVLTTYDTDADILAAVEAGASGYLLKDAPPEELAAAVRTAAAGQSALAPAVALRLMDRMRTPAEALTKRELEVLQLVADG
LSNQQISKQLFLSQATVKSHLVHVYAKLGVDSRTSAVAAAATRRLIRTP

Nucleotide


Download         Length: 630 bp        

>NTDB_id=184166 B4U39_RS30450 WP_030390325.1 6647194..6647823(-) (vraR) [Streptomyces sp. 3211 isolate 3]
GTGACCATCCGTCTCCTGCTCGCCGACGACCACCCGGTGGTCCGGGCCGGGCTGCGCGCGGTGCTCGACACCGAACCGGA
CTTCGCGGTGGTCGCCGAGGCCGCCACCGCCGAGCGGGCGGTGGAGCTGGCCGCCGGCGAACCGGTGGACGTGGTCCTGA
TGGACCTCCAGTTCGGCCGCGGCATGCACGGCTCCGAGGCGACGGCCCTGATCACCGCCCGGCCGGGCGCGCCCCGGGTG
CTGGTGCTGACCACGTACGACACGGACGCGGACATCCTGGCGGCGGTGGAGGCGGGTGCCTCCGGCTACCTGCTCAAGGA
CGCCCCGCCGGAGGAGCTGGCGGCGGCCGTACGGACGGCTGCGGCGGGCCAGTCGGCGCTGGCCCCTGCGGTGGCGCTGC
GCCTGATGGACCGGATGCGGACCCCGGCGGAGGCGCTGACGAAGCGGGAGCTGGAGGTGTTGCAGCTGGTCGCGGACGGA
CTGTCGAACCAGCAGATCTCCAAGCAGCTGTTCCTCAGCCAGGCCACGGTCAAGTCCCACCTGGTGCACGTCTACGCCAA
ACTCGGCGTCGACTCCCGCACCTCGGCGGTCGCGGCAGCCGCCACCCGCCGCCTGATCCGGACCCCCTAG

Domains

Predicted by InterProScan.

Response regulator receiver domain (Response_reg)

(6-117)

Bacterial regulatory proteins, luxR family (GerE)

(145-199)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  vraR Staphylococcus aureus N315

38.095

100

0.383

Multiple sequence alignment