Detailed information    

insolico Bioinformatically predicted

Overview

Name   cytR   Type   Regulator
Locus tag   B4U39_RS14365 Genome accession   NZ_CP020039
Coordinates   3111689..3112714 (-) Length   341 a.a.
NCBI ID   WP_030388554.1    Uniprot ID   -
Organism   Streptomyces sp. 3211 isolate 3     
Function   promote competence gene expression (predicted from homology)   
Competence regulation

Genomic Context

Location: 3106689..3117714
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  B4U39_RS14335 - 3107270..3107836 (-) 567 WP_053176421.1 GPR1/FUN34/YaaH family transporter -
  B4U39_RS14340 - 3107935..3108468 (-) 534 WP_030388550.1 universal stress protein -
  B4U39_RS14345 - 3108867..3109187 (+) 321 WP_234437911.1 hypothetical protein -
  B4U39_RS14350 - 3109564..3110739 (+) 1176 WP_030388552.1 helix-turn-helix domain-containing protein -
  B4U39_RS14355 orn 3110845..3111447 (+) 603 WP_030388553.1 oligoribonuclease -
  B4U39_RS14365 cytR 3111689..3112714 (-) 1026 WP_030388554.1 LacI family DNA-binding transcriptional regulator Regulator
  B4U39_RS14370 - 3112816..3114177 (+) 1362 WP_079404992.1 extracellular solute-binding protein -
  B4U39_RS14375 - 3114275..3115183 (+) 909 WP_237291690.1 sugar ABC transporter permease -
  B4U39_RS14380 - 3115180..3116004 (+) 825 WP_030388557.1 carbohydrate ABC transporter permease -
  B4U39_RS14385 - 3116067..3117446 (+) 1380 WP_237297055.1 GH1 family beta-glucosidase -

Sequence

Protein


Download         Length: 341 a.a.        Molecular weight: 36052.91 Da        Isoelectric Point: 6.2640

>NTDB_id=184119 B4U39_RS14365 WP_030388554.1 3111689..3112714(-) (cytR) [Streptomyces sp. 3211 isolate 3]
MNGHGRSGGRPTLEEVAARAGVGRGTVSRVINGSSKVSEQTRVAVEAAVAELGYVPNRAARALAANRTDAIALVIPEPEA
RFFAEPYFSEVVRGVGAALAETEVQLVLTLAGGDRERRRLSQYLAGHRVDGVLLVSVHAGDPLPELLAELGIPTVISGRR
SAAETLPSVDSDNLAGAAEAVRHLLDRGRRTIATITGPLDVYGAQCRLDGYRQALATAGHAADEPLIAVGDFTEEGGRRA
MRELLERRPALDAVFAASDVMAAGARRELRAAGRRIPEDVALVGFDDSVVARHMDPPLTSVRQPIEEMGRTMTAMLLGRI
AGETGEAAAVLPNRLVVRESS

Nucleotide


Download         Length: 1026 bp        

>NTDB_id=184119 B4U39_RS14365 WP_030388554.1 3111689..3112714(-) (cytR) [Streptomyces sp. 3211 isolate 3]
ATGAACGGGCACGGGCGCAGCGGGGGACGGCCGACCCTGGAGGAGGTGGCGGCGCGCGCCGGAGTCGGGCGCGGCACGGT
CTCCCGGGTGATCAACGGATCCTCCAAGGTCAGCGAGCAGACCAGGGTCGCCGTCGAGGCGGCCGTGGCCGAGCTGGGAT
ACGTGCCGAACCGCGCCGCACGCGCCCTCGCGGCCAACCGCACCGACGCCATCGCCCTCGTGATCCCCGAACCCGAGGCC
CGCTTCTTCGCCGAGCCCTACTTCTCCGAAGTGGTCCGCGGGGTCGGCGCCGCCCTCGCCGAGACCGAGGTGCAGCTCGT
CCTCACCCTGGCCGGCGGCGACCGCGAGCGCCGCCGCCTCTCCCAGTACCTGGCCGGGCACCGCGTCGACGGAGTGCTCC
TCGTCTCCGTCCACGCCGGGGACCCGCTGCCGGAGCTGCTGGCCGAGCTCGGTATCCCGACGGTGATCAGCGGCCGCCGC
TCCGCCGCCGAGACCCTGCCCAGCGTGGACTCCGACAACCTGGCGGGCGCGGCCGAGGCGGTACGCCACCTCCTCGACCG
GGGCCGCCGCACGATCGCCACGATCACCGGCCCGCTGGACGTGTACGGCGCCCAGTGCCGCCTCGACGGCTACCGGCAGG
CCCTGGCCACCGCCGGGCACGCCGCCGACGAGCCGCTGATCGCGGTCGGCGACTTCACCGAGGAGGGCGGCCGACGGGCC
ATGCGCGAACTGCTGGAGCGCCGCCCCGCGCTCGACGCCGTCTTCGCCGCCTCGGACGTCATGGCGGCCGGCGCCCGCAG
GGAGCTGCGCGCGGCCGGCCGCCGGATCCCCGAGGACGTCGCGCTGGTCGGCTTCGACGACTCCGTGGTGGCCCGGCACA
TGGACCCGCCGCTGACCAGCGTCCGGCAGCCGATCGAGGAAATGGGCCGGACCATGACGGCGATGCTGCTGGGGAGGATC
GCGGGGGAGACGGGCGAGGCGGCCGCCGTGCTGCCGAACCGGCTGGTGGTCCGGGAATCGTCCTGA

Domains

Predicted by InterProScan.

Bacterial regulatory proteins, lacI family (LacI)

(12-57)

Periplasmic binding protein-like domain (Peripla_BP_3)

(181-341)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  cytR Vibrio cholerae C6706

38.872

98.827

0.384
  cytR Vibrio parahaemolyticus RIMD 2210633

36.905

98.534

0.364

Multiple sequence alignment