Detailed information    

insolico Bioinformatically predicted

Overview

Name   radC   Type   Machinery gene
Locus tag   Vp2S01_RS13920 Genome accession   NZ_CP020034
Coordinates   2709523..2709999 (+) Length   158 a.a.
NCBI ID   WP_031855499.1    Uniprot ID   -
Organism   Vibrio parahaemolyticus strain 20130629002S01     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2704523..2714999
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  Vp2S01_RS13895 (Vp2S01_2508) - 2704627..2704803 (-) 177 WP_009842282.1 helix-turn-helix domain-containing protein -
  Vp2S01_RS13905 (Vp2S01_2509) - 2705036..2708395 (-) 3360 WP_031855501.1 DEAD/DEAH box helicase -
  Vp2S01_RS13910 - 2708528..2708734 (-) 207 WP_089183715.1 AlpA family transcriptional regulator -
  Vp2S01_RS13915 (Vp2S01_2510) - 2708857..2709294 (-) 438 WP_031855500.1 RNase H family protein -
  Vp2S01_RS13920 (Vp2S01_2511) radC 2709523..2709999 (+) 477 WP_031855499.1 DNA repair protein RadC Machinery gene
  Vp2S01_RS13925 (Vp2S01_2512) - 2709996..2710421 (+) 426 WP_031855498.1 DUF2787 family protein -
  Vp2S01_RS13930 (Vp2S01_2513) - 2710448..2710876 (+) 429 WP_085577075.1 DUF2787 family protein -
  Vp2S01_RS13935 (Vp2S01_2514) - 2711087..2711647 (+) 561 WP_031855497.1 tyrosine-type recombinase/integrase -
  Vp2S01_RS13940 (Vp2S01_2515) - 2711749..2712249 (+) 501 WP_031855496.1 lecithin retinol acyltransferase family protein -
  Vp2S01_RS13945 (Vp2S01_2516) - 2712274..2713041 (-) 768 WP_031855495.1 inovirus Gp2 family protein -
  Vp2S01_RS13950 (Vp2S01_2517) - 2713233..2714345 (-) 1113 WP_236576003.1 hypothetical protein -

Sequence

Protein


Download         Length: 158 a.a.        Molecular weight: 17831.33 Da        Isoelectric Point: 5.5471

>NTDB_id=184073 Vp2S01_RS13920 WP_031855499.1 2709523..2709999(+) (radC) [Vibrio parahaemolyticus strain 20130629002S01]
MRTPNTDHDYPFEISELNELLERAAEALAVKYKREGTFTNPTNVKEYLKLKLGAHDREVFAVMFLDNQHQLISFEELFFG
TIDAASIYPREVLKTALNHNAAAVIFAHNHPSGIAEPSQADKRITQRLIDALKLVDIRVLDHIVVGEDCVSFAEKGLI

Nucleotide


Download         Length: 477 bp        

>NTDB_id=184073 Vp2S01_RS13920 WP_031855499.1 2709523..2709999(+) (radC) [Vibrio parahaemolyticus strain 20130629002S01]
ATGCGTACCCCAAATACTGACCATGACTACCCCTTTGAGATTTCAGAACTCAATGAACTGCTAGAGCGTGCAGCCGAGGC
GCTGGCTGTGAAATACAAACGTGAAGGCACGTTCACTAACCCAACCAATGTCAAAGAGTACTTAAAGCTCAAATTAGGAG
CACATGACCGAGAAGTGTTTGCTGTGATGTTTCTTGATAACCAACATCAATTGATCAGTTTCGAAGAATTGTTCTTTGGC
ACGATTGACGCCGCTTCGATTTATCCCCGTGAAGTATTGAAGACAGCACTAAACCACAACGCTGCCGCCGTGATTTTTGC
CCACAATCATCCTTCCGGTATTGCTGAGCCTAGCCAAGCCGACAAACGCATTACACAGCGACTTATCGACGCTCTAAAGC
TCGTGGATATCCGTGTCTTAGACCACATCGTTGTTGGTGAAGACTGTGTCTCATTTGCTGAAAAGGGATTGATATGA

Domains

Predicted by InterProScan.

RadC-like JAB domain (RadC)

(38-157)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radC Haemophilus influenzae Rd KW20

56.667

75.949

0.43