Detailed information NTG0183885

Bioinformatically predicted

Overview

• Name: rpoS
• Type: Regulator
• Locus tag: B1T56_RS17540
• Genome accession: NZ_CP020025
• Coordinates: 3471232..3472224 (-)
• Length: 330 a.a.
• NCBI ID: WP_105178426.1
• Uniprot ID: -
• Organism: Escherichia coli strain WB61
• Function: regulation of chitinases (predicted from homology) Competence regulation

Genomic Context

Location: 3466232..3477224

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
B1T56_RS17515 (B1T56_17415)	pphB	3467593..3468249 (+)	657	WP_077516550.1	protein-serine/threonine phosphatase	-
B1T56_RS17520 (B1T56_17420)	-	3468290..3468526 (-)	237	WP_000562980.1	non-oxidative hydroxyarylic acid decarboxylases subunit D	-
B1T56_RS17525 (B1T56_17425)	-	3468537..3469964 (-)	1428	WP_077516548.1	non-oxidative hydroxyarylic acid decarboxylases subunit C	-
B1T56_RS17530 (B1T56_17430)	-	3469964..3470557 (-)	594	WP_077516546.1	non-oxidative hydroxyarylic acid decarboxylases subunit B	-
B1T56_RS17535 (B1T56_17435)	-	3470704..3471111 (+)	408	WP_001208064.1	MarR family winged helix-turn-helix transcriptional regulator	-
B1T56_RS17540 (B1T56_17440)	rpoS	3471232..3472224 (-)	993	WP_105178426.1	RNA polymerase sigma factor RpoS	Regulator
B1T56_RS17545 (B1T56_17445)	nlpD	3472287..3473381 (-)	1095	WP_306174120.1	murein hydrolase activator NlpD	-
B1T56_RS17550 (B1T56_17450)	pcm	3473566..3474192 (-)	627	WP_000254708.1	protein-L-isoaspartate O-methyltransferase	-
B1T56_RS17555 (B1T56_17455)	surE	3474186..3474947 (-)	762	WP_001295182.1	5'/3'-nucleotidase SurE	-
B1T56_RS17560 (B1T56_17460)	truD	3474928..3475977 (-)	1050	WP_000568962.1	tRNA pseudouridine(13) synthase TruD	-
B1T56_RS17565 (B1T56_17465)	ispF	3475974..3476453 (-)	480	WP_001219242.1	2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase	-
B1T56_RS17570 (B1T56_17470)	ispD	3476453..3477163 (-)	711	WP_000246131.1	2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase	-

Sequence

Protein

• Length: 330 a.a.
• Molecular weight: 37914.81 Da
• Isoelectric Point: 4.5886

>NTDB_id=183885 B1T56_RS17540 WP_105178426.1 3471232..3472224(-) (rpoS) [Escherichia coli strain WB61]
MSQNTLKVHDLNEDAEFDENGVEVFDEKALVEEEPSDNDLAAEELLSQGATQRVLDATQLYLGEIGYSPLLTAEEEVYFA
RRALRGDVASRRRMIESNLRLVVKIARRYGNRGLALLDLIEEGNLGLIRAVEKFDPERGFRFSTYATWWIRQTIERAIMN
QTRTIRLPIHIVKELNVYLRTARELSHKLDHEPSAEEIAEQLDKPVDDVSRMLRLNERITSVDTPLGGDSEKALLDILAD
EKENGPEDTTQDDDMKQSIVKWLFELNAKQREVLARRFGLLGYEAATLEDVGREIGLTRERVRQIQVEGLRRLREILQTQ
GLNIEALFRE

Nucleotide

• Length: 993 bp

>NTDB_id=183885 B1T56_RS17540 WP_105178426.1 3471232..3472224(-) (rpoS) [Escherichia coli strain WB61]
ATGAGTCAGAATACGCTGAAAGTTCATGATTTAAATGAAGATGCGGAATTTGATGAGAACGGAGTTGAGGTTTTTGACGA
AAAGGCCTTAGTAGAAGAGGAACCCAGTGATAACGATTTGGCCGCAGAGGAACTGTTATCGCAGGGAGCCACACAGCGTG
TGCTGGACGCGACTCAGCTTTACCTTGGTGAGATTGGTTATTCACCACTGTTAACGGCCGAAGAAGAAGTTTATTTTGCG
CGTCGCGCACTGCGTGGAGATGTTGCCTCTCGCCGCCGGATGATCGAGAGTAACTTGCGTCTGGTGGTAAAAATTGCCCG
CCGTTATGGCAATCGTGGTCTGGCGTTGCTGGATCTTATCGAAGAGGGCAACCTGGGGCTGATCCGCGCGGTAGAGAAGT
TTGACCCGGAACGTGGTTTCCGCTTCTCAACATACGCAACCTGGTGGATTCGCCAGACGATCGAACGGGCGATTATGAAC
CAAACCCGTACTATTCGTTTGCCGATTCACATCGTAAAGGAGCTGAACGTTTACCTGCGAACCGCACGTGAGTTGTCCCA
TAAGCTGGACCACGAACCGAGCGCGGAAGAGATCGCAGAGCAACTGGATAAGCCAGTTGATGACGTCAGCCGTATGCTTC
GTCTTAACGAGCGCATTACCTCGGTAGACACCCCGCTGGGTGGAGATTCCGAAAAAGCGTTGCTGGACATCCTGGCCGAT
GAAAAAGAAAACGGCCCGGAAGATACCACGCAAGATGACGATATGAAACAAAGCATCGTCAAATGGCTGTTCGAGCTGAA
CGCCAAACAGCGTGAAGTACTGGCACGTCGATTCGGTTTGCTGGGGTACGAAGCGGCAACACTGGAAGATGTAGGTCGTG
AAATTGGCCTCACCCGTGAACGTGTTCGCCAGATTCAGGTTGAAGGCCTGCGCCGTTTGCGCGAAATCCTGCAAACGCAG
GGGCTGAATATCGAAGCGCTGTTCCGCGAATAA

Domains

Predicted by InterProScan.

• Sigma-70 region 2 (Sigma70_r2) (94-163)

• Sigma-70 factor, region 1.2 (Sigma70_r1_2) (56-88)

• Sigma-70, region 4 (Sigma70_r4) (262-315)

• Sigma-70 region 3 (Sigma70_r3) (174-248)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
rpoS	Vibrio cholerae O1 biovar El Tor strain E7946	73.602	97.576	0.718