Detailed information    

insolico Bioinformatically predicted

Overview

Name   luxS   Type   Regulator
Locus tag   B1T56_RS17285 Genome accession   NZ_CP020025
Coordinates   3422013..3422528 (-) Length   171 a.a.
NCBI ID   WP_001130208.1    Uniprot ID   Q8FEP8
Organism   Escherichia coli strain WB61     
Function   induction of competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 3417013..3427528
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  B1T56_RS17260 (B1T56_17155) ygaZ 3417412..3418149 (+) 738 WP_000445658.1 L-valine exporter subunit YgaZ -
  B1T56_RS17265 (B1T56_17160) ygaH 3418139..3418474 (+) 336 WP_000119745.1 L-valine transporter subunit YgaH -
  B1T56_RS17270 (B1T56_17165) emrR 3418565..3419095 (+) 531 WP_000378442.1 multidrug efflux transporter EmrAB transcriptional repressor EmrR -
  B1T56_RS17275 (B1T56_17170) emrA 3419222..3420394 (+) 1173 WP_001295175.1 multidrug efflux MFS transporter periplasmic adaptor subunit EmrA -
  B1T56_RS17280 (B1T56_17175) emrB 3420411..3421949 (+) 1539 WP_001296316.1 multidrug efflux MFS transporter permease subunit EmrB -
  B1T56_RS17285 (B1T56_17180) luxS 3422013..3422528 (-) 516 WP_001130208.1 S-ribosylhomocysteine lyase Regulator
  B1T56_RS17290 (B1T56_17185) gshA 3422678..3424234 (-) 1557 WP_000611804.1 glutamate--cysteine ligase -
  B1T56_RS17295 (B1T56_17190) yqaA 3424307..3424735 (-) 429 WP_001287454.1 YqaA family protein -
  B1T56_RS17300 (B1T56_17195) yqaB 3424732..3425298 (-) 567 WP_000273309.1 fructose-1-phosphate/6-phosphogluconate phosphatase -
  B1T56_RS17315 (B1T56_17210) csrA 3426046..3426231 (-) 186 WP_000906486.1 carbon storage regulator CsrA -

Sequence

Protein


Download         Length: 171 a.a.        Molecular weight: 19443.21 Da        Isoelectric Point: 5.0362

>NTDB_id=183882 B1T56_RS17285 WP_001130208.1 3422013..3422528(-) (luxS) [Escherichia coli strain WB61]
MPLLDSFTVDHTRMEAPAVRVAKTMNTPHGDAITVFDLRFCVPNKEVMPERGIHTLEHLFAGFMRNHLNGNGVEIIDISP
MGCRTGFYMSLIGTPDEQRVADAWKAAMEDVLKVQDQNQIPELNVYQCGTYQMHSLQEAQDIARNILERDVRINSNEELA
LPKEKLQELHI

Nucleotide


Download         Length: 516 bp        

>NTDB_id=183882 B1T56_RS17285 WP_001130208.1 3422013..3422528(-) (luxS) [Escherichia coli strain WB61]
ATGCCGTTGTTAGATAGCTTCACAGTCGATCATACCCGGATGGAAGCGCCTGCAGTTCGGGTGGCGAAAACAATGAACAC
CCCGCATGGCGACGCAATCACCGTGTTCGATCTGCGCTTCTGCGTGCCGAACAAAGAAGTGATGCCAGAAAGAGGGATCC
ATACCCTGGAGCACCTGTTTGCTGGTTTTATGCGTAACCATCTTAACGGTAATGGCGTAGAGATTATCGATATCTCGCCA
ATGGGCTGCCGCACCGGTTTTTATATGAGTCTGATTGGTACGCCAGATGAGCAGCGTGTCGCTGATGCCTGGAAAGCGGC
AATGGAAGACGTGCTGAAAGTGCAGGATCAGAATCAGATCCCGGAACTGAACGTCTACCAGTGTGGCACTTACCAGATGC
ACTCGTTGCAGGAAGCGCAGGATATTGCGCGTAACATTCTGGAACGTGACGTGCGCATCAACAGCAACGAAGAACTGGCG
CTGCCGAAAGAGAAGTTGCAGGAACTGCACATCTAG

Domains

Predicted by InterProScan.

S-Ribosylhomocysteinase (LuxS) (LuxS)

(4-152)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB Q8FEP8

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  luxS Vibrio cholerae strain A1552

73.684

100

0.737