Detailed information    

insolico Bioinformatically predicted

Overview

Name   sbcB   Type   Machinery gene
Locus tag   B1T56_RS13990 Genome accession   NZ_CP020025
Coordinates   2729037..2730464 (+) Length   475 a.a.
NCBI ID   WP_072664921.1    Uniprot ID   -
Organism   Escherichia coli strain WB61     
Function   promote homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2724037..2735464
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  B1T56_RS13955 (B1T56_13865) - 2724190..2724567 (+) 378 WP_000854681.1 TA system toxin CbtA family protein -
  B1T56_RS13960 - 2724564..2724740 (+) 177 Protein_2598 DUF5983 family protein -
  B1T56_RS24280 - 2724789..2724866 (+) 78 Protein_2599 hypothetical protein -
  B1T56_RS13965 (B1T56_13875) - 2724829..2725212 (+) 384 WP_269467223.1 EutP/PduV family microcompartment system protein -
  B1T56_RS13970 (B1T56_13880) tmaR 2725313..2725642 (-) 330 WP_000450409.1 DUF496 family protein -
  B1T56_RS13975 (B1T56_13885) yeeA 2725814..2726872 (-) 1059 WP_001200890.1 FUSC family protein -
  B1T56_RS13980 (B1T56_13890) sbmC 2727070..2727543 (-) 474 WP_001105376.1 DNA gyrase inhibitor SbmC -
  B1T56_RS13985 (B1T56_13895) dacD 2727662..2728828 (-) 1167 WP_001303036.1 serine-type D-Ala-D-Ala carboxypeptidase DacD -
  B1T56_RS13990 (B1T56_13900) sbcB 2729037..2730464 (+) 1428 WP_072664921.1 exodeoxyribonuclease I Machinery gene
  B1T56_RS13995 (B1T56_13910) plaP 2730672..2732030 (-) 1359 WP_000019197.1 putrescine/proton symporter PlaP -
  B1T56_RS14000 yoeI 2732020..2732082 (-) 63 WP_010723108.1 membrane protein YoeI -
  B1T56_RS14005 (B1T56_13915) yeeY 2732297..2733226 (-) 930 WP_000803363.1 LysR substrate-binding domain-containing protein -
  B1T56_RS14010 (B1T56_13920) yeeZ 2733272..2734096 (-) 825 WP_000754737.1 SDR family oxidoreductase -
  B1T56_RS14015 (B1T56_13925) yoeB 2734179..2734433 (-) 255 WP_000767829.1 type II toxin-antitoxin system mRNA interferase toxin YoeB -
  B1T56_RS14020 (B1T56_13930) yefM 2734430..2734681 (-) 252 WP_001259255.1 YoeB-YefM toxin-antitoxin system antitoxin YefM -
  B1T56_RS14025 (B1T56_13935) hisL 2734964..2735014 (+) 51 WP_001364200.1 his operon leader peptide -

Sequence

Protein


Download         Length: 475 a.a.        Molecular weight: 54467.65 Da        Isoelectric Point: 5.2416

>NTDB_id=183872 B1T56_RS13990 WP_072664921.1 2729037..2730464(+) (sbcB) [Escherichia coli strain WB61]
MMNDGKQQSTFLFHDYETFGTHPALDRPAQFAAIRTDNEFNVIGEPEVFYCKPADDYLPQPGAVLITGITPQEARAKGEN
EAAFAARIHSLFTVPKTCILGYNNVRFDDEVTRNVFYRNFYDPYAWSWQHDNSRWDLLDVMRACYALRPEGINWPENDDG
LPSFRLEHLTKANGIEHSNAHDAMADVYATIAMAKLVKTRQPRLFDYLFTHRNKHKLMALIDVPQMKPLVHVSGMFGAWR
GNTSWVAPLAWHPENRNAVIMVDLAGDISPLLELDSDTLRERLYTAKTDLGDNAAVPVKLVHINKCPVLAQANTLRPEDA
ERLGIDRQHCLDNLKVLRENPQVRDKVVAIFAEAEPFTPSDNVDAQLYNGFFSDADRAAMKIVLETEPRNLPALDITFVD
KRIEKLLFNYRARNFPGTLDDNEQQRWLEHRRQVFTPEFLQGYADELQMLAQQYADDKEKVALLKALWQYAEEIV

Nucleotide


Download         Length: 1428 bp        

>NTDB_id=183872 B1T56_RS13990 WP_072664921.1 2729037..2730464(+) (sbcB) [Escherichia coli strain WB61]
ATGATGAATGACGGTAAGCAACAATCTACCTTTTTGTTTCACGATTACGAAACCTTTGGCACGCACCCCGCGTTAGATCG
CCCTGCACAGTTCGCAGCCATTCGCACTGATAACGAATTCAATGTCATCGGCGAACCCGAAGTCTTTTACTGCAAGCCCG
CGGATGACTATTTACCCCAGCCTGGAGCAGTATTAATTACCGGTATTACCCCGCAGGAAGCTCGGGCGAAAGGAGAAAAC
GAAGCCGCATTTGCCGCCCGTATTCACTCGCTTTTTACCGTACCGAAGACCTGTATTCTGGGCTACAACAATGTGCGTTT
CGACGACGAAGTCACACGCAACGTTTTTTATCGTAATTTCTACGATCCTTACGCCTGGAGCTGGCAGCATGATAACTCGC
GCTGGGATTTACTGGATGTTATGCGTGCCTGTTATGCCCTGCGCCCGGAAGGAATAAACTGGCCTGAAAATGATGACGGT
CTACCGAGCTTTCGCCTTGAGCATTTAACCAAAGCGAATGGTATTGAACATAGCAACGCCCACGATGCGATGGCTGATGT
GTACGCCACTATTGCGATGGCGAAACTGGTAAAAACGCGTCAGCCACGCCTGTTTGATTATCTCTTTACCCATCGTAATA
AACACAAGCTGATGGCGTTGATTGATGTTCCGCAGATGAAACCCCTGGTTCACGTTTCCGGAATGTTTGGGGCATGGCGC
GGCAATACCAGCTGGGTGGCACCGCTGGCGTGGCATCCTGAAAATCGCAATGCCGTAATTATGGTGGATTTGGCAGGAGA
CATTTCGCCATTACTGGAACTGGATAGCGACACATTGCGCGAGCGTTTATATACCGCAAAAACCGATCTTGGCGATAACG
CCGCCGTTCCGGTTAAGCTGGTGCACATCAATAAATGTCCGGTGCTGGCCCAGGCGAATACGCTACGTCCGGAAGACGCT
GAGCGTTTAGGGATTGATCGTCAACATTGCCTGGATAACCTGAAAGTGTTGCGCGAAAACCCGCAAGTACGCGACAAAGT
TGTGGCAATTTTTGCAGAAGCTGAACCGTTTACACCATCAGATAATGTAGATGCACAGCTTTATAATGGCTTTTTTAGCG
ACGCCGATCGTGCAGCAATGAAAATCGTGCTGGAGACTGAACCGCGTAATTTACCGGCTCTGGATATCACCTTTGTTGAT
AAGCGTATCGAGAAACTCCTGTTCAACTACCGCGCCCGCAACTTCCCCGGCACGTTAGATGACAACGAGCAGCAACGCTG
GCTTGAGCACCGCCGCCAGGTCTTCACGCCAGAGTTTTTGCAGGGCTACGCTGATGAATTGCAGATGCTGGCACAACAGT
ATGCCGATGACAAAGAGAAAGTGGCGCTGTTAAAAGCGCTTTGGCAGTACGCGGAAGAGATCGTCTGA

Domains

Predicted by InterProScan.

Exonuclease (RNase_T)

(13-188)

Exonuclease C-terminal (ExoI_SH3)

(212-472)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sbcB Vibrio cholerae O1 biovar El Tor strain E7946

59.362

98.947

0.587

Multiple sequence alignment