Detailed information    

insolico Bioinformatically predicted

Overview

Name   radC   Type   Machinery gene
Locus tag   B1T56_RS13940 Genome accession   NZ_CP020025
Coordinates   2722893..2723369 (+) Length   158 a.a.
NCBI ID   WP_001354275.1    Uniprot ID   -
Organism   Escherichia coli strain WB61     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2717893..2728369
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  B1T56_RS13920 (B1T56_13835) - 2718415..2720931 (+) 2517 WP_001531238.1 hypothetical protein -
  B1T56_RS13925 (B1T56_13840) - 2721007..2721462 (+) 456 WP_000581506.1 IrmA family protein -
  B1T56_RS23850 - 2721537..2721771 (+) 235 Protein_2591 DUF905 family protein -
  B1T56_RS13930 (B1T56_13845) - 2721777..2722445 (+) 669 Protein_2592 DUF932 domain-containing protein -
  B1T56_RS24100 - 2722419..2722877 (+) 459 WP_420536434.1 antirestriction protein -
  B1T56_RS13940 (B1T56_13850) radC 2722893..2723369 (+) 477 WP_001354275.1 JAB domain-containing protein Machinery gene
  B1T56_RS13945 (B1T56_13855) yeeT 2723432..2723653 (+) 222 WP_000692300.1 DUF987 domain-containing protein -
  B1T56_RS13950 (B1T56_13860) cbeA 2723732..2724100 (+) 369 WP_105178465.1 type IV toxin-antitoxin system YeeU family antitoxin -
  B1T56_RS13955 (B1T56_13865) - 2724190..2724567 (+) 378 WP_000854681.1 TA system toxin CbtA family protein -
  B1T56_RS13960 - 2724564..2724740 (+) 177 Protein_2598 DUF5983 family protein -
  B1T56_RS24280 - 2724789..2724866 (+) 78 Protein_2599 hypothetical protein -
  B1T56_RS13965 (B1T56_13875) - 2724829..2725212 (+) 384 WP_269467223.1 EutP/PduV family microcompartment system protein -
  B1T56_RS13970 (B1T56_13880) tmaR 2725313..2725642 (-) 330 WP_000450409.1 DUF496 family protein -
  B1T56_RS13975 (B1T56_13885) yeeA 2725814..2726872 (-) 1059 WP_001200890.1 FUSC family protein -
  B1T56_RS13980 (B1T56_13890) sbmC 2727070..2727543 (-) 474 WP_001105376.1 DNA gyrase inhibitor SbmC -

Sequence

Protein


Download         Length: 158 a.a.        Molecular weight: 17668.26 Da        Isoelectric Point: 7.2517

>NTDB_id=183871 B1T56_RS13940 WP_001354275.1 2722893..2723369(+) (radC) [Escherichia coli strain WB61]
MQQLSFLPGNMTPGERSLIQRALKTLDRHLHEPGVAFTSTHAAREWLILNMAGLEREEFRVLYLNNQNQLIAGETLFTGT
INRTEVHPREVIKRALYHNAAAVVLAHNHPSGEVTPSKADRLITERLVQALALVDIRVPDHLIVGGNQVFSFAEHGLL

Nucleotide


Download         Length: 477 bp        

>NTDB_id=183871 B1T56_RS13940 WP_001354275.1 2722893..2723369(+) (radC) [Escherichia coli strain WB61]
ATGCAGCAGCTTTCCTTTCTGCCCGGAAACATGACGCCCGGCGAGCGCAGCCTCATTCAGCGGGCCCTGAAAACCCTGGA
CCGCCATCTTCATGAACCCGGCGTGGCCTTCACCTCCACGCATGCGGCACGGGAATGGCTGATTCTGAACATGGCGGGAC
TGGAGCGTGAAGAATTCCGGGTGCTGTATCTGAATAACCAGAATCAGCTGATTGCCGGTGAAACCCTCTTCACCGGCACC
ATCAACCGCACGGAAGTCCATCCCCGGGAAGTGATTAAACGCGCCCTGTACCACAATGCCGCTGCCGTGGTACTGGCACA
CAATCACCCGTCCGGTGAAGTCACACCCAGTAAGGCAGACCGGCTTATCACCGAACGTCTGGTACAGGCACTGGCCCTGG
TGGATATCCGGGTGCCGGACCATCTGATAGTCGGTGGCAACCAGGTTTTCTCCTTTGCGGAACACGGTCTGCTTTAA

Domains

Predicted by InterProScan.

RadC-like JAB domain (RadC)

(38-157)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radC Haemophilus influenzae Rd KW20

54.867

71.519

0.392

Multiple sequence alignment