Detailed information    

insolico Bioinformatically predicted

Overview

Name   rapC   Type   Regulator
Locus tag   BS21228_RS16110 Genome accession   NZ_CP020023
Coordinates   3020433..3021563 (+) Length   376 a.a.
NCBI ID   WP_014479091.1    Uniprot ID   -
Organism   Bacillus subtilis strain ATCC 21228     
Function   inhibit the DNA-binding function of ComA (predicted from homology)   
Competence regulation

Genomic Context

Location: 3015433..3026563
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  BS21228_RS16085 (BS21228_16030) - 3015773..3015970 (-) 198 WP_014479085.1 hypothetical protein -
  BS21228_RS16095 (BS21228_16035) - 3016569..3017042 (-) 474 WP_014479086.1 immunity protein YezG family protein -
  BS21228_RS16100 (BS21228_16040) yeeF 3017047..3019056 (-) 2010 WP_031600245.1 LXG family T7SS effector deoxyribonuclease toxin YeeF -
  BS21228_RS16105 (BS21228_16045) - 3019268..3020289 (+) 1022 Protein_3128 hypothetical protein -
  BS21228_RS16110 (BS21228_16050) rapC 3020433..3021563 (+) 1131 WP_014479091.1 response regulator aspartate phosphatase RapH Regulator
  BS21228_RS16115 (BS21228_16055) phrH 3021553..3021726 (+) 174 WP_003242557.1 phosphatase RapH inhibitor PhrH -
  BS21228_RS16120 (BS21228_16060) yeeI 3021886..3022605 (+) 720 WP_003233863.1 YebC/PmpR family DNA-binding transcriptional regulator -
  BS21228_RS16125 (BS21228_16065) - 3022739..3023356 (+) 618 WP_049832634.1 spore coat protein -
  BS21228_RS16130 (BS21228_16070) yezE 3023471..3024055 (+) 585 WP_014479093.1 TetR/AcrR family transcriptional regulator -
  BS21228_RS16135 (BS21228_16075) cotJA 3024232..3024480 (+) 249 WP_014479094.1 spore coat-associated protein CotJA -
  BS21228_RS16140 (BS21228_16080) cotJB 3024464..3024727 (+) 264 WP_014479095.1 spore coat protein CotJB -
  BS21228_RS16145 (BS21228_16085) cotJC 3024742..3025311 (+) 570 WP_014479096.1 spore coat protein CotJC -
  BS21228_RS16150 (BS21228_16090) yesJ 3025436..3025978 (+) 543 WP_014479097.1 GNAT family N-acetyltransferase -
  BS21228_RS16155 (BS21228_16095) yesK 3026001..3026303 (+) 303 Protein_3138 YesK-like family protein -

Sequence

Protein


Download         Length: 376 a.a.        Molecular weight: 44030.39 Da        Isoelectric Point: 5.9937

>NTDB_id=183779 BS21228_RS16110 WP_014479091.1 3020433..3021563(+) (rapC) [Bacillus subtilis strain ATCC 21228]
MSQAIPSSRVGVKINEWYKMIRQFSVPDAEVLKAEVEQDIQKMEEDQDLLIYYSLMCFRHQLMLDYLEPGQPYGNRPTVT
ELLETIETPQKKLTGLLKYYSLFFRGMYEFDQKEYVEAIGYYREAEKELPFVSDEIEKAEFHFKVAEAYYHMKQTHVSMH
HILQALDIYQNHPLYSIRTIQSLFVIAGNYDDFKHYDKALPHLEKALELAMDIQNDRFIAISLLNIANSYDRSGDDQMAV
EHFQKAAKVSREKVPDLLPKVLFGLSWTLCKAGQTQKAFQFIEEGLDHITARSHKFYKELFLFLQAVYKETVDERKIHDL
LSYFEKKNLHAYIEACARSAAAVFESSCHFEQAAAFYRKVLKAQEDILKGECLYAY

Nucleotide


Download         Length: 1131 bp        

>NTDB_id=183779 BS21228_RS16110 WP_014479091.1 3020433..3021563(+) (rapC) [Bacillus subtilis strain ATCC 21228]
TTGAGTCAAGCCATACCGTCTTCGCGTGTAGGTGTTAAGATTAATGAATGGTACAAGATGATTCGCCAGTTCAGTGTTCC
GGATGCTGAGGTTCTGAAAGCGGAGGTGGAGCAGGACATTCAGAAGATGGAAGAGGATCAGGATTTGCTGATCTATTATT
CTCTGATGTGTTTTCGGCACCAGCTGATGCTTGATTATTTGGAGCCGGGACAGCCTTACGGAAATCGTCCTACAGTGACA
GAGCTTCTTGAAACGATTGAGACCCCTCAGAAAAAACTCACAGGCCTTTTGAAATACTACTCTTTGTTTTTCCGCGGCAT
GTATGAATTTGACCAAAAAGAATATGTGGAAGCGATCGGGTATTATCGCGAGGCGGAGAAAGAACTGCCGTTTGTGTCAG
ATGAAATTGAGAAAGCGGAATTCCATTTTAAAGTGGCCGAAGCGTATTATCACATGAAGCAAACCCATGTGTCGATGCAT
CATATTCTTCAAGCCTTAGACATTTATCAAAACCATCCCTTATACAGCATTAGAACGATACAAAGCTTGTTTGTGATCGC
CGGCAACTATGATGATTTCAAACATTATGATAAAGCGCTCCCGCATTTAGAAAAGGCGCTGGAATTGGCCATGGACATTC
AAAATGACAGGTTTATCGCCATTTCTCTATTGAACATCGCGAACAGCTATGACAGATCAGGAGACGATCAGATGGCTGTA
GAACATTTCCAAAAAGCGGCGAAAGTAAGCAGAGAGAAAGTGCCTGATCTGCTTCCGAAAGTCTTGTTTGGATTAAGCTG
GACATTATGTAAAGCGGGCCAAACACAGAAGGCGTTTCAGTTCATAGAGGAAGGATTAGACCATATCACAGCACGTTCTC
ACAAATTTTATAAAGAATTGTTTCTGTTCTTGCAGGCCGTGTACAAGGAGACTGTTGATGAACGAAAAATTCATGATCTT
TTAAGCTATTTCGAAAAAAAGAACCTGCACGCTTACATTGAAGCATGTGCCCGGAGTGCTGCCGCTGTTTTTGAAAGCAG
CTGTCACTTTGAACAAGCCGCTGCGTTTTATCGGAAAGTGCTGAAAGCCCAAGAAGATATTCTAAAAGGAGAGTGTTTAT
ATGCCTATTAA

Domains

Predicted by InterProScan.

response regulator aspartate phosphatase H, N terminal (RapH_N)

(5-65)

Tetratricopeptide repeat (TPR_7)

(222-251)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rapC Bacillus subtilis subsp. subtilis str. 168

40.957

100

0.41
  rapF Bacillus subtilis subsp. subtilis str. 168

40.053

100

0.402

Multiple sequence alignment