Detailed information
Bioinformatically predicted
Overview
| Name | rocC | Type | Regulator |
| Locus tag | A9F00_RS00675 | Genome accession | NZ_CP015929 |
| Coordinates | 155787..156479 (+) | Length | 230 a.a. |
| NCBI ID | WP_010945894.1 | Uniprot ID | Q5ZZ78 |
| Organism | Legionella pneumophila strain Philadelphia_2 | ||
| Function | rocR chaperone; repress natural transformation (predicted from homology) Competence regulation |
||
Related MGE
Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.
Gene-MGE association summary
| MGE type | MGE coordinates | Gene coordinates | Relative position | Distance (bp) |
|---|---|---|---|---|
| ICE | 139257..210198 | 155787..156479 | within | 0 |
Gene organization within MGE regions
Location: 139257..210198
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| A9F00_RS00620 (A9F00_00620) | - | 140195..141493 (+) | 1299 | WP_010945883.1 | AAA-associated domain-containing protein | - |
| A9F00_RS00625 (A9F00_00625) | - | 141570..142184 (-) | 615 | WP_015444948.1 | thiol:disulfide interchange protein DsbA/DsbL | - |
| A9F00_RS00630 (A9F00_00630) | - | 142195..142797 (-) | 603 | WP_010945885.1 | c-type cytochrome | - |
| A9F00_RS00635 (A9F00_00635) | yihA | 142872..143474 (+) | 603 | WP_010945886.1 | ribosome biogenesis GTP-binding protein YihA/YsxC | - |
| A9F00_RS00640 (A9F00_00640) | cegC2 | 143588..146896 (+) | 3309 | WP_010945887.1 | Dot/Icm T4SS effector CegC2 | - |
| A9F00_RS00645 (A9F00_00645) | acs | 146993..148876 (-) | 1884 | WP_010945888.1 | acetate--CoA ligase | - |
| A9F00_RS00650 (A9F00_00650) | mmsB | 148878..149774 (-) | 897 | WP_015444947.1 | 3-hydroxyisobutyrate dehydrogenase | - |
| A9F00_RS00655 (A9F00_00655) | - | 149798..151297 (-) | 1500 | WP_015444946.1 | CoA-acylating methylmalonate-semialdehyde dehydrogenase | - |
| A9F00_RS15360 | - | 151408..151584 (-) | 177 | WP_014840774.1 | dodecin domain-containing protein | - |
| A9F00_RS00660 (A9F00_00660) | - | 151762..154230 (+) | 2469 | WP_010945891.1 | hypothetical protein | - |
| A9F00_RS00665 (A9F00_00665) | dapB | 154334..155065 (-) | 732 | WP_010945892.1 | 4-hydroxy-tetrahydrodipicolinate reductase | - |
| A9F00_RS00670 (A9F00_00670) | - | 155245..155430 (-) | 186 | WP_010945893.1 | hypothetical protein | - |
| A9F00_RS00675 (A9F00_00675) | rocC | 155787..156479 (+) | 693 | WP_010945894.1 | ProQ/FinO family protein | Regulator |
| A9F00_RS00680 (A9F00_00680) | - | 156480..157550 (+) | 1071 | WP_010945895.1 | hypothetical protein | - |
| A9F00_RS00685 (A9F00_00685) | sdhB | 157650..163277 (-) | 5628 | WP_010945896.1 | Dot/Icm T4SS effector SdhB | - |
| A9F00_RS00690 (A9F00_00690) | pyk | 163368..164792 (-) | 1425 | WP_010945897.1 | pyruvate kinase | - |
| A9F00_RS00695 (A9F00_00695) | - | 164776..165966 (-) | 1191 | WP_010945898.1 | phosphoglycerate kinase | - |
| A9F00_RS00700 (A9F00_00700) | gap | 165977..166969 (-) | 993 | WP_015444943.1 | type I glyceraldehyde-3-phosphate dehydrogenase | - |
| A9F00_RS00705 (A9F00_00705) | tkt | 167051..169129 (-) | 2079 | WP_010945900.1 | transketolase | - |
| A9F00_RS00710 (A9F00_00710) | - | 169315..170649 (+) | 1335 | WP_010945901.1 | hypothetical protein | - |
| A9F00_RS00715 (A9F00_00715) | - | 170748..172763 (+) | 2016 | WP_015444939.1 | M3 family metallopeptidase | - |
| A9F00_RS00725 (A9F00_00725) | - | 173570..173890 (+) | 321 | WP_126297580.1 | hypothetical protein | - |
| A9F00_RS00735 (A9F00_00735) | cas9 | 174366..178484 (+) | 4119 | WP_011212792.1 | type II-B CRISPR-associated RNA-guided endonuclease Cas9/Csx12 | - |
| A9F00_RS00740 (A9F00_00740) | cas1 | 178481..179473 (+) | 993 | WP_011212793.1 | CRISPR-associated endonuclease Cas1 | - |
| A9F00_RS00745 (A9F00_00745) | cas2 | 179480..179779 (+) | 300 | WP_011212794.1 | CRISPR-associated endonuclease Cas2 | - |
| A9F00_RS00750 (A9F00_00750) | cas4 | 179760..180353 (+) | 594 | WP_011212795.1 | CRISPR-associated protein Cas4 | - |
| A9F00_RS00755 (A9F00_00755) | - | 183968..184405 (+) | 438 | WP_021437110.1 | M48 family metallopeptidase | - |
| A9F00_RS00760 (A9F00_00760) | - | 184395..185078 (-) | 684 | WP_011212796.1 | LexA family protein | - |
| A9F00_RS16000 (A9F00_00765) | - | 185231..186100 (+) | 870 | WP_011212797.1 | hypothetical protein | - |
| A9F00_RS00770 (A9F00_00770) | - | 186066..186428 (+) | 363 | WP_021437111.1 | hypothetical protein | - |
| A9F00_RS00775 (A9F00_00775) | - | 186441..186644 (+) | 204 | WP_011212799.1 | carbon storage regulator | - |
| A9F00_RS00780 (A9F00_00780) | - | 186641..186943 (+) | 303 | WP_011212800.1 | TrbC/VirB2 family protein | - |
| A9F00_RS15370 | - | 186953..187234 (+) | 282 | WP_011212801.1 | type IV secretion system protein VirB3 | - |
| A9F00_RS00785 (A9F00_00785) | - | 187221..189701 (+) | 2481 | WP_011212802.1 | VirB4 family type IV secretion/conjugal transfer ATPase | - |
| A9F00_RS00790 (A9F00_00790) | - | 189698..190408 (+) | 711 | WP_011212803.1 | type IV secretion system protein | - |
| A9F00_RS15375 | lvhB7 | 190423..190569 (+) | 147 | WP_011212804.1 | T4SS-associated protein LvhB7 | - |
| A9F00_RS00795 (A9F00_00795) | lvrD | 190566..190961 (+) | 396 | WP_011212805.1 | T4SS-associated protein LvrD | - |
| A9F00_RS00800 (A9F00_00800) | - | 190965..192005 (+) | 1041 | WP_011212806.1 | type IV secretion system protein | - |
| A9F00_RS00805 (A9F00_00805) | - | 192002..192718 (+) | 717 | WP_011212807.1 | virB8 family protein | - |
| A9F00_RS00810 (A9F00_00810) | virB9 | 192715..193467 (+) | 753 | WP_011212808.1 | P-type conjugative transfer protein VirB9 | - |
| A9F00_RS00815 (A9F00_00815) | - | 193464..194555 (+) | 1092 | WP_011212809.1 | TrbI/VirB10 family protein | - |
| A9F00_RS00820 (A9F00_00820) | virB11 | 194557..195561 (+) | 1005 | WP_011212810.1 | P-type DNA transfer ATPase VirB11 | - |
| A9F00_RS00825 (A9F00_00825) | - | 195554..197455 (+) | 1902 | WP_011212811.1 | type IV secretory system conjugative DNA transfer family protein | - |
| A9F00_RS00830 (A9F00_00830) | - | 197553..198350 (+) | 798 | WP_011212812.1 | DUF1566 domain-containing protein | - |
| A9F00_RS00835 (A9F00_00835) | - | 198584..199345 (+) | 762 | WP_126297581.1 | hypothetical protein | - |
| A9F00_RS00840 (A9F00_00840) | traA | 199469..202108 (-) | 2640 | WP_011212814.1 | Ti-type conjugative transfer relaxase TraA | - |
| A9F00_RS00845 (A9F00_00845) | - | 202357..202563 (+) | 207 | WP_011212815.1 | hypothetical protein | - |
| A9F00_RS00850 (A9F00_00850) | - | 202550..202819 (+) | 270 | WP_011212816.1 | conjugal transfer protein TraD | - |
| A9F00_RS00855 (A9F00_00855) | - | 202913..203560 (+) | 648 | WP_011212817.1 | hypothetical protein | - |
| A9F00_RS00860 (A9F00_00860) | comEC | 203564..204373 (+) | 810 | WP_011212818.1 | ComEC/Rec2 family competence protein | Machinery gene |
| A9F00_RS00865 (A9F00_00865) | - | 204400..204861 (-) | 462 | WP_011212819.1 | nucleoside deaminase | - |
| A9F00_RS00870 (A9F00_00870) | - | 204854..206281 (-) | 1428 | WP_011212820.1 | VUT family protein | - |
| A9F00_RS00875 (A9F00_00875) | - | 206274..206633 (-) | 360 | WP_011212821.1 | hypothetical protein | - |
| A9F00_RS00880 (A9F00_00880) | - | 206650..207297 (-) | 648 | WP_011212822.1 | LexA family transcriptional regulator | - |
| A9F00_RS00885 (A9F00_00885) | - | 207466..207705 (+) | 240 | WP_011212823.1 | hypothetical protein | - |
| A9F00_RS00890 (A9F00_00890) | - | 207736..207942 (+) | 207 | WP_011212824.1 | hypothetical protein | - |
| A9F00_RS00895 (A9F00_00895) | - | 207891..209099 (+) | 1209 | WP_011212825.1 | tyrosine-type recombinase/integrase | - |
| A9F00_RS00900 (A9F00_00900) | - | 209326..210150 (+) | 825 | WP_011212826.1 | type IV toxin-antitoxin system AbiEi family antitoxin domain-containing protein | - |
Sequence
Protein
Download Length: 230 a.a. Molecular weight: 25741.65 Da Isoelectric Point: 10.7030
>NTDB_id=183779 A9F00_RS00675 WP_010945894.1 155787..156479(+) (rocC) [Legionella pneumophila strain Philadelphia_2]
MRKQALHPRTAVINKAQKNQSKRARSDALLWLAANFPEAFDNSLRIRPLKIGIMSDILQHAEKAEQVGISKSKLREAVVL
FTRRLDYLACLKAREVRIDLHGNPVAEVTEEEAEHASMKIKKRVEKSVKNARKQVNAKAANHSHVNSQPSAVSSVKPMNS
FDSHPEPLLPIYPLRSSTYASQNVAMQSAKSPSVVVKHKAPKQYDPDAVARLKEKLGLSRKAEEKKETTE
MRKQALHPRTAVINKAQKNQSKRARSDALLWLAANFPEAFDNSLRIRPLKIGIMSDILQHAEKAEQVGISKSKLREAVVL
FTRRLDYLACLKAREVRIDLHGNPVAEVTEEEAEHASMKIKKRVEKSVKNARKQVNAKAANHSHVNSQPSAVSSVKPMNS
FDSHPEPLLPIYPLRSSTYASQNVAMQSAKSPSVVVKHKAPKQYDPDAVARLKEKLGLSRKAEEKKETTE
Nucleotide
Download Length: 693 bp
>NTDB_id=183779 A9F00_RS00675 WP_010945894.1 155787..156479(+) (rocC) [Legionella pneumophila strain Philadelphia_2]
ATGAGAAAGCAGGCGCTGCACCCACGAACCGCTGTCATCAATAAAGCACAAAAAAATCAATCCAAGCGAGCGCGATCTGA
CGCATTATTATGGCTTGCGGCTAATTTCCCTGAGGCATTCGATAATTCTTTGCGTATTCGGCCATTAAAGATTGGTATTA
TGTCTGATATATTGCAGCATGCAGAAAAAGCAGAGCAAGTTGGAATTTCTAAAAGTAAATTAAGGGAAGCTGTTGTTCTT
TTTACCCGTCGTCTTGATTATCTGGCTTGCCTGAAAGCTCGTGAAGTCCGTATTGATTTGCACGGAAATCCAGTAGCCGA
GGTTACTGAGGAAGAAGCTGAGCATGCTTCCATGAAAATTAAAAAACGCGTGGAAAAGAGTGTTAAAAATGCTCGCAAAC
AAGTGAATGCAAAAGCGGCTAATCATTCGCATGTAAATAGTCAGCCAAGTGCAGTTTCCAGCGTTAAGCCAATGAATTCG
TTTGACTCTCATCCTGAGCCTCTTTTGCCAATATATCCTCTCAGAAGCTCTACCTATGCCTCACAAAATGTGGCAATGCA
ATCCGCCAAGTCACCATCCGTCGTAGTCAAACATAAAGCACCAAAGCAATATGATCCGGATGCTGTAGCCCGTTTAAAAG
AAAAATTAGGATTGTCTCGAAAAGCAGAAGAGAAAAAGGAAACAACAGAGTAA
ATGAGAAAGCAGGCGCTGCACCCACGAACCGCTGTCATCAATAAAGCACAAAAAAATCAATCCAAGCGAGCGCGATCTGA
CGCATTATTATGGCTTGCGGCTAATTTCCCTGAGGCATTCGATAATTCTTTGCGTATTCGGCCATTAAAGATTGGTATTA
TGTCTGATATATTGCAGCATGCAGAAAAAGCAGAGCAAGTTGGAATTTCTAAAAGTAAATTAAGGGAAGCTGTTGTTCTT
TTTACCCGTCGTCTTGATTATCTGGCTTGCCTGAAAGCTCGTGAAGTCCGTATTGATTTGCACGGAAATCCAGTAGCCGA
GGTTACTGAGGAAGAAGCTGAGCATGCTTCCATGAAAATTAAAAAACGCGTGGAAAAGAGTGTTAAAAATGCTCGCAAAC
AAGTGAATGCAAAAGCGGCTAATCATTCGCATGTAAATAGTCAGCCAAGTGCAGTTTCCAGCGTTAAGCCAATGAATTCG
TTTGACTCTCATCCTGAGCCTCTTTTGCCAATATATCCTCTCAGAAGCTCTACCTATGCCTCACAAAATGTGGCAATGCA
ATCCGCCAAGTCACCATCCGTCGTAGTCAAACATAAAGCACCAAAGCAATATGATCCGGATGCTGTAGCCCGTTTAAAAG
AAAAATTAGGATTGTCTCGAAAAGCAGAAGAGAAAAAGGAAACAACAGAGTAA
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| rocC | Legionella pneumophila str. Paris |
97.391 |
100 |
0.974 |