Detailed information    

insolico Bioinformatically predicted

Overview

Name   subA/fin   Type   Machinery gene
Locus tag   BS21228_RS12565 Genome accession   NZ_CP020023
Coordinates   2339081..2339311 (+) Length   76 a.a.
NCBI ID   WP_003243417.1    Uniprot ID   A0ABU0VCT2
Organism   Bacillus subtilis strain ATCC 21228     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2334081..2344311
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  BS21228_RS12535 (BS21228_12490) ridA 2334245..2334622 (+) 378 WP_003226738.1 2-iminobutanoate/2-iminopropanoate deaminase -
  BS21228_RS12540 (BS21228_12495) spoVG 2334817..2335110 (+) 294 WP_003218346.1 septation regulator SpoVG -
  BS21228_RS12545 (BS21228_12500) glmU 2335303..2336673 (+) 1371 WP_014478599.1 bifunctional UDP-N-acetylglucosamine diphosphorylase/glucosamine-1-phosphate N-acetyltransferase GlmU -
  BS21228_RS12550 (BS21228_12505) prsS 2336696..2337649 (+) 954 WP_014478600.1 ribose-phosphate diphosphokinase -
  BS21228_RS12555 (BS21228_12510) rplYB 2337734..2338348 (+) 615 WP_003243443.1 50S ribosomal protein L25/general stress protein Ctc -
  BS21228_RS12560 (BS21228_12515) pth 2338455..2339021 (+) 567 WP_003226727.1 aminoacyl-tRNA hydrolase -
  BS21228_RS12565 (BS21228_12520) subA/fin 2339081..2339311 (+) 231 WP_003243417.1 anti-sigma-F factor Fin Machinery gene
  BS21228_RS12570 (BS21228_12525) mfd 2339381..2342914 (+) 3534 WP_014478601.1 transcription-repair coupling factor -
  BS21228_RS12575 (BS21228_12530) spoVT 2343050..2343586 (+) 537 WP_003218365.1 stage V sporulation protein T -

Sequence

Protein


Download         Length: 76 a.a.        Molecular weight: 8847.81 Da        Isoelectric Point: 5.3895

>NTDB_id=183760 BS21228_RS12565 WP_003243417.1 2339081..2339311(+) (subA/fin) [Bacillus subtilis strain ATCC 21228]
MALHYYCRHCGVKVGSLESSMVSTDSLGFQHLTNEERNDMISYKENGDVHVLTICEDCQEALDRNPHYHEYHTFIQ

Nucleotide


Download         Length: 231 bp        

>NTDB_id=183760 BS21228_RS12565 WP_003243417.1 2339081..2339311(+) (subA/fin) [Bacillus subtilis strain ATCC 21228]
ATGGCTTTGCATTATTATTGTCGTCATTGCGGAGTGAAAGTAGGCAGTCTCGAATCTTCAATGGTATCGACAGACTCACT
TGGATTTCAGCACTTAACAAATGAGGAAAGAAACGATATGATTTCTTATAAAGAAAATGGAGATGTCCATGTTTTGACGA
TATGTGAAGACTGCCAAGAGGCGCTTGACCGAAATCCGCATTACCACGAATATCACACATTTATTCAATAA

Domains

Predicted by InterProScan.

Anti-sigma-F factor Fin (Fin)

(1-76)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  subA/fin Bacillus subtilis subsp. subtilis str. 168

100

100

1