Detailed information    

insolico Bioinformatically predicted

Overview

Name   luxS   Type   Regulator
Locus tag   B4603_RS11200 Genome accession   NZ_CP020019
Coordinates   2183802..2184272 (+) Length   156 a.a.
NCBI ID   WP_000164421.1    Uniprot ID   P65329
Organism   Staphylococcus aureus strain 08S00974     
Function   induction of competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 2178802..2189272
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  B4603_RS11180 coaW 2179113..2179916 (+) 804 WP_000862732.1 type II pantothenate kinase -
  B4603_RS11185 - 2180046..2180717 (-) 672 WP_000120549.1 DUF2750 domain-containing protein -
  B4603_RS11190 - 2181116..2182309 (-) 1194 WP_000183714.1 hypothetical protein -
  B4603_RS11195 - 2182309..2183493 (-) 1185 WP_001291508.1 M20 family metallopeptidase -
  B4603_RS11200 luxS 2183802..2184272 (+) 471 WP_000164421.1 S-ribosylhomocysteine lyase Regulator
  B4603_RS11205 - 2184424..2184774 (-) 351 WP_001024035.1 membrane protein -
  B4603_RS11210 - 2184788..2186089 (-) 1302 WP_001242303.1 pyrimidine-nucleoside phosphorylase -
  B4603_RS11220 deoC 2186369..2187031 (-) 663 WP_001083328.1 deoxyribose-phosphate aldolase -
  B4603_RS11225 deoD 2187345..2188055 (+) 711 WP_000160304.1 purine-nucleoside phosphorylase -
  B4603_RS11230 - 2188176..2188619 (-) 444 WP_000070865.1 Dps family protein -
  B4603_RS11235 - 2188819..2189232 (-) 414 WP_001123309.1 DUF393 domain-containing protein -

Sequence

Protein


Download         Length: 156 a.a.        Molecular weight: 17513.76 Da        Isoelectric Point: 5.4567

>NTDB_id=183584 B4603_RS11200 WP_000164421.1 2183802..2184272(+) (luxS) [Staphylococcus aureus strain 08S00974]
MTKMNVESFNLDHTKVVAPFIRLAGTMEGLNGDVIHKYDIRFKQPNKEHMDMPGLHSLEHLMAENIRNHSDKVVDLSPMG
CQTGFYVSFINHDNYDDVLNIVEATLNDVLNATEVPACNEVQCGWAASHSLEGAKTIAQAFLDKRNEWHDVFGTGK

Nucleotide


Download         Length: 471 bp        

>NTDB_id=183584 B4603_RS11200 WP_000164421.1 2183802..2184272(+) (luxS) [Staphylococcus aureus strain 08S00974]
ATGACAAAAATGAATGTTGAAAGTTTCAATTTAGATCATACTAAAGTGGTTGCCCCATTTATTAGATTAGCGGGAACGAT
GGAAGGATTAAACGGAGATGTCATTCACAAATACGACATTCGTTTCAAACAACCAAACAAAGAACATATGGATATGCCAG
GATTGCATTCATTAGAACATTTAATGGCTGAAAATATTAGAAATCATAGTGACAAAGTCGTTGATTTAAGTCCTATGGGT
TGCCAAACTGGTTTCTATGTATCATTTATTAATCATGATAATTATGATGATGTATTAAATATTGTTGAAGCAACTTTAAA
TGATGTGCTAAATGCTACTGAAGTGCCAGCTTGTAATGAAGTACAATGTGGCTGGGCAGCTAGTCATTCATTAGAAGGTG
CTAAAACTATCGCTCAAGCATTTCTAGACAAACGAAACGAATGGCATGATGTTTTCGGTACAGGAAAATAA

Domains

Predicted by InterProScan.

S-Ribosylhomocysteinase (LuxS) (LuxS)

(5-148)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB P65329

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  luxS Vibrio cholerae strain A1552

44.681

90.385

0.404