Detailed information    

insolico Bioinformatically predicted

Overview

Name   recR   Type   Machinery gene
Locus tag   BVZ63_RS02470 Genome accession   NZ_CP020014
Coordinates   510191..510793 (+) Length   200 a.a.
NCBI ID   WP_005626527.1    Uniprot ID   A0ABY1VST8
Organism   Haemophilus influenzae strain 11P6H     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 505191..515793
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  BVZ63_RS02450 (BVZ63_508) comA 505237..506034 (-) 798 WP_005686900.1 pilus assembly protein PilM Machinery gene
  BVZ63_RS02455 (BVZ63_509) - 506133..508733 (+) 2601 WP_105197663.1 penicillin-binding protein 1A -
  BVZ63_RS02460 (BVZ63_510) - 508806..509651 (+) 846 WP_011961682.1 23S rRNA (adenine(2030)-N(6))-methyltransferase RlmJ -
  BVZ63_RS02465 (BVZ63_511) - 509804..510133 (+) 330 WP_011961681.1 YbaB/EbfC family nucleoid-associated protein -
  BVZ63_RS02470 (BVZ63_512) recR 510191..510793 (+) 603 WP_005626527.1 recombination mediator RecR Machinery gene
  BVZ63_RS02475 (BVZ63_513) - 510809..512764 (+) 1956 WP_105197665.1 DNA topoisomerase III -
  BVZ63_RS02480 (BVZ63_514) secG 512873..513214 (+) 342 WP_005649335.1 preprotein translocase subunit SecG -
  BVZ63_RS02490 (BVZ63_516) - 513759..515429 (-) 1671 WP_005686908.1 fructose-specific PTS transporter subunit EIIC -

Sequence

Protein


Download         Length: 200 a.a.        Molecular weight: 22107.23 Da        Isoelectric Point: 6.4843

>NTDB_id=183464 BVZ63_RS02470 WP_005626527.1 510191..510793(+) (recR) [Haemophilus influenzae strain 11P6H]
MQSSPLLEHLIENLRCLPGVGPKSAQRMAYHLLQRNRSGGMNLARALTEAMSKIGHCSQCRDFTEEDTCNICNNPRRQNS
GLLCVVEMPADIQAIEQTGQFSGRYFVLMGHLSPLDGIGPREIGLDLLQKRLVEESFHEVILATNPTVEGDATANYIAEM
CRQHNIKVSRIAHGIPVGGELETVDGTTLTHSFLGRRQID

Nucleotide


Download         Length: 603 bp        

>NTDB_id=183464 BVZ63_RS02470 WP_005626527.1 510191..510793(+) (recR) [Haemophilus influenzae strain 11P6H]
ATGCAAAGCAGTCCACTTTTAGAACACCTTATTGAAAACTTACGTTGTCTTCCTGGCGTAGGGCCTAAATCGGCGCAACG
TATGGCTTATCATCTTTTACAACGTAATCGTAGTGGTGGAATGAATTTAGCTCGAGCACTCACAGAAGCTATGTCTAAAA
TTGGCCATTGTTCACAATGTCGAGACTTTACGGAAGAAGATACTTGCAACATTTGCAATAATCCACGCCGTCAAAATTCA
GGTTTGCTTTGTGTCGTTGAAATGCCAGCAGATATTCAAGCGATTGAGCAAACAGGGCAATTTTCAGGACGTTATTTTGT
TTTAATGGGACATTTGTCTCCACTTGATGGTATTGGACCTCGTGAAATTGGCTTAGATTTACTGCAAAAACGCTTAGTAG
AAGAATCTTTCCACGAAGTGATTCTTGCAACAAACCCAACTGTGGAAGGCGATGCAACAGCAAATTACATTGCTGAAATG
TGCCGCCAACATAATATCAAAGTGAGTCGTATCGCTCACGGTATCCCTGTCGGAGGGGAACTTGAAACTGTGGACGGCAC
AACGCTTACTCACTCTTTTCTAGGTCGTCGTCAAATCGACTAA

Domains

Predicted by InterProScan.

RecR protein (RecR_ZnF)

(41-77)

Toprim domain (Toprim_4)

(83-172)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recR Bacillus subtilis subsp. subtilis str. 168

44.221

99.5

0.44
  recR Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

43.216

99.5

0.43

Multiple sequence alignment