Detailed information    

insolico Bioinformatically predicted

Overview

Name   ruvA   Type   Machinery gene
Locus tag   BVZ63_RS01820 Genome accession   NZ_CP020014
Coordinates   386211..386825 (-) Length   204 a.a.
NCBI ID   WP_005686751.1    Uniprot ID   -
Organism   Haemophilus influenzae strain 11P6H     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 381211..391825
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  BVZ63_RS01795 (BVZ63_374) proC 381780..382595 (+) 816 WP_005686744.1 pyrroline-5-carboxylate reductase -
  BVZ63_RS01800 (BVZ63_375) - 382595..383761 (+) 1167 WP_005660002.1 3-phenylpropionate MFS transporter -
  BVZ63_RS01805 (BVZ63_376) xerD 383791..384684 (+) 894 WP_005686747.1 site-specific tyrosine recombinase XerD -
  BVZ63_RS01810 (BVZ63_377) - 384857..385144 (+) 288 WP_105197619.1 DUF5339 domain-containing protein -
  BVZ63_RS01815 (BVZ63_378) ruvB 385196..386203 (-) 1008 WP_005686749.1 Holliday junction branch migration DNA helicase RuvB Machinery gene
  BVZ63_RS01820 (BVZ63_379) ruvA 386211..386825 (-) 615 WP_005686751.1 Holliday junction branch migration protein RuvA Machinery gene
  BVZ63_RS01825 (BVZ63_380) ruvC 386888..387460 (-) 573 WP_011961738.1 crossover junction endodeoxyribonuclease RuvC -
  BVZ63_RS01830 (BVZ63_381) - 387507..388247 (-) 741 WP_005649034.1 YebC/PmpR family DNA-binding transcriptional regulator -
  BVZ63_RS01835 (BVZ63_382) nudB 388407..388883 (-) 477 WP_005686755.1 dihydroneopterin triphosphate diphosphatase -
  BVZ63_RS01840 (BVZ63_383) aspS 388905..390671 (-) 1767 WP_054456884.1 aspartate--tRNA ligase -
  BVZ63_RS01845 (BVZ63_384) - 390890..391408 (+) 519 WP_005649040.1 isoprenylcysteine carboxyl methyltransferase family protein -

Sequence

Protein


Download         Length: 204 a.a.        Molecular weight: 22575.32 Da        Isoelectric Point: 6.5030

>NTDB_id=183453 BVZ63_RS01820 WP_005686751.1 386211..386825(-) (ruvA) [Haemophilus influenzae strain 11P6H]
MIGRLQGILLEKQPPEILLNVQGVGYELLLPMTSFYDLPEIGQETTLFTHLVVREDAHLLFGFAQKTDRTLFRELIKTNG
VGPKLALAILSAMSVEQFAYAIEREELSKLTKIPGVGKKTAERLLVELKGKFKGVKQSDFFVESTHIPLSPSIESHSESS
SDEAISALIALGYKPVEAEKMVKRVAKPELTSEQVIREALKAAL

Nucleotide


Download         Length: 615 bp        

>NTDB_id=183453 BVZ63_RS01820 WP_005686751.1 386211..386825(-) (ruvA) [Haemophilus influenzae strain 11P6H]
ATGATCGGTCGCTTACAAGGCATTCTTTTAGAAAAACAACCTCCAGAAATTTTACTCAATGTGCAAGGCGTAGGCTATGA
ATTGCTTTTGCCTATGACGAGTTTCTATGATTTACCAGAAATTGGACAAGAAACAACTTTATTCACCCATCTTGTTGTTC
GTGAAGATGCTCACTTACTCTTTGGATTTGCCCAGAAAACAGACCGCACTTTATTTCGTGAATTAATTAAAACAAATGGG
GTGGGGCCTAAATTAGCCTTAGCGATTTTATCCGCCATGTCGGTCGAACAATTTGCCTATGCAATAGAGAGAGAAGAACT
TTCTAAACTCACTAAAATTCCAGGTGTTGGCAAAAAAACAGCTGAACGTTTGTTAGTTGAACTCAAAGGTAAATTTAAAG
GCGTAAAACAAAGCGATTTCTTTGTAGAAAGTACGCATATTCCATTATCCCCATCTATTGAATCCCACTCGGAAAGTTCA
TCTGATGAAGCAATTTCAGCCTTGATTGCTTTAGGTTATAAACCTGTAGAAGCAGAAAAAATGGTAAAACGCGTTGCTAA
ACCTGAATTAACCAGTGAACAAGTTATTCGTGAAGCATTAAAAGCCGCATTGTAG

Domains

Predicted by InterProScan.

RuvA N terminal domain (RuvA_N)

(1-62)

RuvA, C-terminal domain (RuvA_C)

(161-202)

Helix-hairpin-helix domain (HHH_5)

(72-129)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ruvA Bacillus subtilis subsp. subtilis str. 168

36.364

100

0.373

Multiple sequence alignment