Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA   Type   Machinery gene
Locus tag   LLJM4_RS11170 Genome accession   NZ_CP015909
Coordinates   2181748..2183109 (-) Length   453 a.a.
NCBI ID   WP_021164999.1    Uniprot ID   -
Organism   Lactococcus cremoris strain JM4     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2176748..2188109
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LLJM4_RS11145 (LLJM4_2170) - 2176898..2177527 (-) 630 WP_011677135.1 hypothetical protein -
  LLJM4_RS11150 (LLJM4_2171) - 2177585..2178670 (-) 1086 WP_032951248.1 PIN/TRAM domain-containing protein -
  LLJM4_RS11155 (LLJM4_04415) - 2178893..2179840 (-) 948 WP_003130410.1 IS30 family transposase -
  LLJM4_RS11160 (LLJM4_2172) - 2180017..2180700 (+) 684 WP_015082909.1 YoaK family protein -
  LLJM4_RS11165 (LLJM4_2173) - 2180757..2181647 (+) 891 WP_011675620.1 IS982-like element IS982B family transposase -
  LLJM4_RS11170 (LLJM4_2174) radA 2181748..2183109 (-) 1362 WP_021164999.1 DNA repair protein RadA Machinery gene
  LLJM4_RS11175 (LLJM4_2175) - 2183279..2184292 (-) 1014 WP_021164998.1 glycosyltransferase family 2 protein -
  LLJM4_RS11180 (LLJM4_2176) - 2184274..2184819 (-) 546 WP_081196888.1 HAD-IIIA family hydrolase -
  LLJM4_RS11185 (LLJM4_2177) - 2184816..2185391 (-) 576 WP_081196889.1 SIS domain-containing protein -
  LLJM4_RS11190 (LLJM4_04420) - 2185453..2185623 (-) 171 WP_311095620.1 hypothetical protein -
  LLJM4_RS11195 (LLJM4_2178) - 2185605..2186183 (-) 579 WP_235853882.1 hypothetical protein -
  LLJM4_RS11200 (LLJM4_2180) - 2186392..2187915 (-) 1524 WP_063283984.1 lipopolysaccharide biosynthesis protein -

Sequence

Protein


Download         Length: 453 a.a.        Molecular weight: 49869.28 Da        Isoelectric Point: 5.2965

>NTDB_id=183426 LLJM4_RS11170 WP_021164999.1 2181748..2183109(-) (radA) [Lactococcus cremoris strain JM4]
MAKKKSSFVCQNCGYKSAKYLGRCPNCGEWSSFAEEVEVQEVKNQRVSMSGERSKPMKLDEVELFDTPRIETDLDEFNRV
LGGGVVPGSLVLIGGDPGIGKSTLLLQVSTQLASRGRVLYVSGEESAQQIKLRAERLGDIDRDFYLYAETNMQSIRAEVE
RLKPNFLIIDSIQTIMTPEIQSTQGSVSQVREVTGELMQIAKTNDIATFIVGHVTKEGQLAGPRMLEHMVDTVLYFEGER
NNTFRILRAVKNRFGSTNEIGIFEMQGHGLVEVTNPSEVFLEERLEGSTGSAIVCALEGTRPILVEIQALTTPTMFGNAK
RTTSGLDFNRVSLIMAVLEKRTGLLMQNQDAYLKSAGGVKLDEPAIDLAVAVAVASSYKELPTDARECFIGEIGLTGEIR
RVTRIEQRLNEAAKLGFKKVYAPKNSIVGIDIPEQIKVIGVTTLTECLKLVFG

Nucleotide


Download         Length: 1362 bp        

>NTDB_id=183426 LLJM4_RS11170 WP_021164999.1 2181748..2183109(-) (radA) [Lactococcus cremoris strain JM4]
ATGGCGAAGAAAAAATCATCTTTTGTTTGTCAAAATTGTGGTTATAAATCTGCAAAGTATCTTGGGCGATGCCCAAATTG
TGGAGAGTGGTCCTCTTTTGCTGAAGAAGTTGAAGTACAGGAAGTCAAAAATCAGCGAGTGTCGATGTCTGGTGAACGTT
CAAAACCAATGAAATTAGATGAAGTTGAGCTTTTTGATACACCACGTATTGAAACAGATCTTGACGAATTTAATCGTGTT
TTAGGTGGTGGTGTTGTTCCTGGTTCACTCGTTTTGATTGGTGGAGACCCAGGAATAGGAAAATCTACGTTGCTTTTGCA
AGTATCGACTCAGCTTGCATCAAGAGGACGGGTTCTCTATGTGAGTGGTGAAGAATCTGCTCAACAAATTAAGCTTAGAG
CGGAACGTTTGGGCGATATTGATCGAGATTTTTATCTTTACGCCGAGACTAACATGCAGTCAATTCGTGCTGAAGTTGAA
CGTTTGAAGCCAAATTTTTTGATTATTGATTCGATCCAAACTATTATGACACCTGAAATTCAATCAACTCAAGGCTCTGT
GAGTCAAGTTCGAGAAGTGACAGGTGAACTCATGCAAATTGCCAAAACGAATGATATTGCTACTTTTATCGTTGGTCATG
TGACGAAAGAAGGTCAATTGGCAGGACCAAGAATGCTAGAGCACATGGTTGATACCGTTCTTTATTTTGAAGGAGAAAGA
AATAATACTTTTAGAATTCTTCGAGCAGTTAAAAACCGGTTTGGGTCAACCAATGAAATTGGTATATTCGAAATGCAAGG
GCATGGTTTAGTTGAAGTAACTAATCCTTCTGAGGTTTTCTTGGAAGAGCGATTAGAGGGTTCAACTGGTTCTGCTATTG
TTTGTGCACTCGAAGGGACACGTCCGATATTAGTTGAAATACAGGCTTTAACTACACCAACAATGTTTGGAAATGCTAAG
AGAACAACTTCTGGTTTAGATTTTAATAGAGTGAGCCTGATTATGGCAGTACTTGAAAAACGGACAGGCTTATTGATGCA
AAATCAAGATGCTTACCTTAAATCAGCTGGGGGAGTAAAATTAGATGAGCCAGCCATTGACCTTGCAGTTGCTGTCGCTG
TAGCCTCAAGTTATAAAGAACTTCCGACGGATGCGCGTGAATGTTTTATTGGTGAAATTGGCTTAACAGGAGAGATTCGT
CGTGTGACGCGAATTGAACAAAGACTGAATGAAGCTGCTAAATTAGGATTCAAAAAAGTCTATGCTCCTAAAAATTCAAT
TGTGGGAATTGATATTCCTGAACAAATAAAAGTAATTGGGGTAACAACCCTAACTGAATGTCTAAAATTAGTATTTGGCT
AA

Domains

Predicted by InterproScan.

AAA domain (AAA_25)

(70-218)

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(8-35)

Subunit ChlI of Mg-chelatase (ChlI)

(360-425)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA Streptococcus pneumoniae Rx1

80.795

100

0.808
  radA Streptococcus pneumoniae D39

80.795

100

0.808
  radA Streptococcus pneumoniae R6

80.795

100

0.808
  radA Streptococcus pneumoniae TIGR4

80.795

100

0.808
  radA Streptococcus mitis SK321

80.795

100

0.808
  radA Streptococcus mitis NCTC 12261

80.574

100

0.806
  radA Bacillus subtilis subsp. subtilis str. 168

61.488

100

0.62

Multiple sequence alignment