Detailed information    

insolico Bioinformatically predicted

Overview

Name   recR   Type   Machinery gene
Locus tag   BV140_RS03030 Genome accession   NZ_CP020013
Coordinates   598720..599322 (+) Length   200 a.a.
NCBI ID   WP_005626527.1    Uniprot ID   A0ABY1VST8
Organism   Haemophilus influenzae strain 6P32H1     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 593720..604322
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  BV140_RS03015 (BV140_615) - 594590..597184 (+) 2595 WP_005686901.1 penicillin-binding protein 1A -
  BV140_RS03020 (BV140_616) - 597260..598105 (+) 846 WP_005686902.1 23S rRNA (adenine(2030)-N(6))-methyltransferase RlmJ -
  BV140_RS03025 (BV140_617) - 598258..598587 (+) 330 WP_005629464.1 YbaB/EbfC family nucleoid-associated protein -
  BV140_RS03030 (BV140_618) recR 598720..599322 (+) 603 WP_005626527.1 recombination mediator RecR Machinery gene
  BV140_RS03035 (BV140_619) - 599338..601293 (+) 1956 WP_005686905.1 DNA topoisomerase III -
  BV140_RS03040 (BV140_620) secG 601402..601740 (+) 339 WP_005686907.1 preprotein translocase subunit SecG -
  BV140_RS03050 (BV140_622) - 602282..603952 (-) 1671 WP_005686908.1 fructose-specific PTS transporter subunit EIIC -

Sequence

Protein


Download         Length: 200 a.a.        Molecular weight: 22107.23 Da        Isoelectric Point: 6.4843

>NTDB_id=183401 BV140_RS03030 WP_005626527.1 598720..599322(+) (recR) [Haemophilus influenzae strain 6P32H1]
MQSSPLLEHLIENLRCLPGVGPKSAQRMAYHLLQRNRSGGMNLARALTEAMSKIGHCSQCRDFTEEDTCNICNNPRRQNS
GLLCVVEMPADIQAIEQTGQFSGRYFVLMGHLSPLDGIGPREIGLDLLQKRLVEESFHEVILATNPTVEGDATANYIAEM
CRQHNIKVSRIAHGIPVGGELETVDGTTLTHSFLGRRQID

Nucleotide


Download         Length: 603 bp        

>NTDB_id=183401 BV140_RS03030 WP_005626527.1 598720..599322(+) (recR) [Haemophilus influenzae strain 6P32H1]
ATGCAAAGCAGCCCACTTTTAGAACACCTTATTGAAAACTTACGTTGTCTTCCTGGCGTAGGGCCTAAATCTGCGCAACG
TATGGCTTATCATCTTTTACAGCGTAATCGTAGCGGTGGAATGAATTTAGCTCGAGCACTCACAGAAGCTATGTCTAAAA
TTGGCCATTGTTCACAATGTCGAGACTTTACGGAAGAAGATACTTGCAACATTTGCAATAATCCACGCCGTCAAAATTCA
GGTTTGCTTTGTGTCGTTGAAATGCCAGCAGATATTCAAGCGATTGAGCAAACAGGGCAATTTTCAGGACGTTATTTTGT
TTTAATGGGACATTTGTCTCCACTTGATGGTATTGGACCTCGTGAAATTGGCTTAGATTTACTGCAAAAACGCTTAGTAG
AAGAATCTTTCCACGAAGTGATTCTTGCAACAAACCCAACTGTGGAAGGCGATGCAACAGCAAATTACATTGCTGAAATG
TGCCGCCAACATAATATCAAAGTGAGTCGTATCGCTCACGGTATCCCTGTCGGAGGGGAACTTGAAACTGTGGACGGCAC
AACGCTTACTCACTCTTTTCTAGGTCGTCGTCAAATCGACTAA

Domains

Predicted by InterProScan.

RecR protein (RecR_ZnF)

(41-77)

Toprim domain (Toprim_4)

(83-172)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recR Bacillus subtilis subsp. subtilis str. 168

44.221

99.5

0.44
  recR Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

43.216

99.5

0.43