Detailed information    

insolico Bioinformatically predicted

Overview

Name   luxS   Type   Regulator
Locus tag   BV134_RS01920 Genome accession   NZ_CP020011
Coordinates   397922..398425 (-) Length   167 a.a.
NCBI ID   WP_005662536.1    Uniprot ID   -
Organism   Haemophilus influenzae strain 67P56H1     
Function   induction of competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 392922..403425
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  BV134_RS01895 (BV134_387) - 393082..394134 (+) 1053 WP_005686979.1 extracellular solute-binding protein -
  BV134_RS01900 (BV134_388) hslU 394204..395538 (-) 1335 WP_042593308.1 HslU--HslV peptidase ATPase subunit -
  BV134_RS01905 (BV134_389) hslV 395549..396076 (-) 528 WP_005662532.1 ATP-dependent protease subunit HslV -
  BV134_RS01910 (BV134_390) aphA 396296..397003 (+) 708 WP_014550389.1 acid phosphatase AphA -
  BV134_RS09135 - 397050..397345 (-) 296 Protein_347 transposase -
  BV134_RS09140 - 397421..397678 (-) 258 WP_032821631.1 IS3 family transposase -
  BV134_RS01920 (BV134_391) luxS 397922..398425 (-) 504 WP_005662536.1 S-ribosylhomocysteine lyase Regulator
  BV134_RS01925 (BV134_392) - 398755..399228 (-) 474 WP_005656551.1 YqaA family protein -
  BV134_RS01930 (BV134_393) - 399228..399830 (-) 603 WP_014550390.1 beta-phosphoglucomutase family hydrolase -
  BV134_RS01935 (BV134_395) - 399946..400323 (+) 378 WP_005652029.1 PRD domain-containing protein -
  BV134_RS01940 (BV134_396) rsmG 400463..401074 (+) 612 WP_014550391.1 16S rRNA (guanine(527)-N(7))-methyltransferase RsmG -
  BV134_RS01945 (BV134_397) - 401200..401574 (+) 375 WP_005662542.1 ATP synthase subunit I -
  BV134_RS01950 (BV134_398) atpB 401611..402399 (+) 789 WP_005629251.1 F0F1 ATP synthase subunit A -
  BV134_RS01955 (BV134_399) atpE 402455..402709 (+) 255 WP_005652035.1 F0F1 ATP synthase subunit C -
  BV134_RS01960 (BV134_400) atpF 402759..403229 (+) 471 WP_005652038.1 F0F1 ATP synthase subunit B -

Sequence

Protein


Download         Length: 167 a.a.        Molecular weight: 18571.22 Da        Isoelectric Point: 4.9925

>NTDB_id=183255 BV134_RS01920 WP_005662536.1 397922..398425(-) (luxS) [Haemophilus influenzae strain 67P56H1]
MPLLDSFKVDHTKMNAPAVRIAKTMRTPKGDNITVFDLRFCIPNKEILSPKGIHTLEHLFAGFMRDHLNGDSIEIIDISP
MGCRTGFYMSLIGTPNEQEVSEAWLASMQDVLGVQDQASIPELNIYQCGSYTEHSLEDAHEIAKNVIARGIGVNKNEDLS
LDNSLLK

Nucleotide


Download         Length: 504 bp        

>NTDB_id=183255 BV134_RS01920 WP_005662536.1 397922..398425(-) (luxS) [Haemophilus influenzae strain 67P56H1]
ATGCCATTACTTGATAGTTTTAAAGTGGATCACACAAAAATGAACGCACCTGCAGTACGCATTGCAAAAACGATGCGCAC
GCCAAAAGGCGATAATATTACTGTTTTTGATTTACGTTTTTGTATTCCAAACAAAGAAATTCTTTCCCCAAAAGGCATTC
ATACACTTGAACATTTATTTGCTGGATTTATGCGCGATCACTTAAATGGCGATAGCATAGAAATTATTGATATTTCTCCG
ATGGGATGTCGCACGGGATTTTATATGTCTTTGATTGGCACACCAAATGAACAGGAAGTATCTGAGGCTTGGTTAGCTTC
AATGCAAGATGTTTTAGGTGTACAAGATCAAGCTTCTATTCCCGAATTAAATATCTATCAATGCGGAAGCTATACGGAAC
ATTCCTTAGAAGATGCACACGAAATTGCCAAAAATGTTATCGCACGCGGTATAGGTGTAAATAAAAATGAAGATTTGTCA
CTCGATAATTCCTTATTAAAATAG

Domains

Predicted by InterProScan.

S-Ribosylhomocysteinase (LuxS) (LuxS)

(4-153)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  luxS Vibrio cholerae strain A1552

74.096

99.401

0.737