Detailed information    

insolico Bioinformatically predicted

Overview

Name   priA   Type   Machinery gene
Locus tag   BV131_RS01995 Genome accession   NZ_CP020010
Coordinates   407567..409759 (-) Length   730 a.a.
NCBI ID   WP_042601806.1    Uniprot ID   -
Organism   Haemophilus influenzae strain 67P38H1     
Function   DNA puliing through the inner membrane (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 402567..414759
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  BV131_RS01970 (BV131_406) relA 402862..405093 (+) 2232 WP_041174600.1 GTP diphosphokinase -
  BV131_RS01975 (BV131_407) - 405108..405464 (+) 357 WP_014550462.1 diacylglycerol kinase -
  BV131_RS01980 (BV131_408) mog 405547..406140 (+) 594 WP_014550461.1 molybdopterin adenylyltransferase -
  BV131_RS01985 (BV131_409) glnB 406142..406480 (+) 339 WP_005627040.1 nitrogen regulatory protein P-II -
  BV131_RS01990 (BV131_410) - 406480..407526 (+) 1047 WP_014550460.1 AI-2E family transporter -
  BV131_RS01995 (BV131_411) priA 407567..409759 (-) 2193 WP_042601806.1 primosomal protein N' Machinery gene
  BV131_RS02000 (BV131_412) trmB 409844..410584 (+) 741 WP_105175693.1 tRNA (guanosine(46)-N7)-methyltransferase TrmB -
  BV131_RS02005 (BV131_413) - 410669..411013 (+) 345 WP_005691779.1 YggL family protein -
  BV131_RS02010 (BV131_414) napF 411219..411749 (+) 531 WP_042601802.1 ferredoxin-type protein NapF -
  BV131_RS02015 (BV131_415) - 411742..412023 (+) 282 WP_005688960.1 chaperone NapD -
  BV131_RS02020 (BV131_416) napA 412060..414543 (+) 2484 WP_042601800.1 nitrate reductase catalytic subunit NapA -

Sequence

Protein


Download         Length: 730 a.a.        Molecular weight: 82325.49 Da        Isoelectric Point: 9.1227

>NTDB_id=183198 BV131_RS01995 WP_042601806.1 407567..409759(-) (priA) [Haemophilus influenzae strain 67P38H1]
MKIVRVALAVPLPRLFDYFVPDDVSLQIGMRVLVPFGTQKRVAIVADFPTKSDVPEDKLKAILQPLDLAPLFTPIYWDWL
HWAANYYQAGLGDVLFQALPVKLRNGESAVKNDRTFWRITDAGKNALEQGELKRSKKQAEALQYLSETDLEKGNNDFSSA
IWSALKAKGFIEEITIQTNPLSWQQRLGNNPIVNAENRLTLNKQQALAFSQLLFHSGFNVWLLDGVTGSGKTEIYLQYIE
EILKSGKQVLVLVPEIGLTPQTVQRFKARFNVEIDVLHSNLTDTQRLYVWDRARSGQSAIVIGTRSALFTQFSNLGAIIL
DEEQDASYKQQDSWRYHARDLAIVLAQKLNISVLMGSATPSLESINNVQNGKYQHLVLSKRAGNSTALRHFVIDLKNQNI
QNGLSKPLLERMKAHLEKGNQVLLFLNRRGFAPVLLCHECGWIAQCPHCEKPYTYHQHQNVLRCHHCGAQKTIPRQCGDC
GSTHLVTTGLGTEQLEETLKTLFPHYSVARIDRDSTARKGKLEGYLEDIQQGKSQILIGTQMLAKGHHFPNVTLVALVNV
DSALFSLDFRAEERLAQLYIQVAGRAGRADKQGEVVLQTHYPDHPLLTTLLAKGYQAFAKETLQLRHSMGLPPFTFQALF
KAQARHSDLAENCLSQIADFFQSKQITGLQMLGPMPAPFSKKAGQYRWQLLLQHPSRITLQKVLREYQQAELEKNSQVRL
ILDVDPQDLS

Nucleotide


Download         Length: 2193 bp        

>NTDB_id=183198 BV131_RS01995 WP_042601806.1 407567..409759(-) (priA) [Haemophilus influenzae strain 67P38H1]
ATGAAAATTGTCCGAGTGGCACTGGCTGTGCCGCTTCCTCGTTTATTTGATTATTTCGTCCCCGATGATGTTTCATTACA
AATCGGTATGCGTGTTCTTGTGCCTTTTGGCACCCAAAAACGTGTCGCCATTGTGGCTGATTTTCCGACAAAATCGGACG
TGCCAGAGGATAAACTCAAGGCTATTCTTCAACCATTGGATTTAGCCCCACTTTTTACGCCCATTTATTGGGATTGGCTT
CATTGGGCAGCAAATTATTATCAAGCGGGATTAGGCGATGTGTTATTTCAAGCCTTGCCTGTGAAATTGCGTAACGGCGA
AAGTGCGGTAAAAAATGACCGCACTTTTTGGCGAATTACGGATGCGGGGAAAAATGCCCTTGAACAAGGCGAATTAAAAC
GCTCGAAAAAGCAAGCTGAAGCCCTACAATACTTATCTGAAACTGATCTTGAAAAAGGCAATAATGATTTTTCCTCTGCC
ATTTGGTCTGCCTTAAAAGCCAAAGGGTTTATTGAGGAAATTACTATCCAAACAAATCCCCTAAGCTGGCAACAAAGATT
AGGCAATAACCCAATTGTCAATGCTGAAAATCGTTTAACCTTAAATAAGCAGCAAGCCTTAGCCTTCAGCCAACTGCTCT
TTCATTCTGGCTTCAACGTATGGCTGCTCGATGGGGTGACTGGTTCAGGTAAAACAGAAATTTATCTGCAATATATTGAA
GAAATTTTAAAATCGGGTAAGCAAGTATTAGTGCTTGTACCCGAAATCGGGCTAACACCTCAAACGGTGCAACGTTTTAA
AGCACGTTTTAATGTAGAAATTGATGTACTGCATTCTAATTTAACCGATACGCAACGGCTTTATGTATGGGATCGAGCCC
GCTCTGGACAAAGTGCCATTGTGATTGGCACGAGATCGGCATTGTTCACACAATTTTCTAATCTTGGTGCAATTATTTTG
GACGAAGAACAGGACGCGTCTTACAAACAGCAAGACAGTTGGCGTTACCATGCACGAGATTTAGCAATCGTGCTTGCTCA
AAAACTGAACATTTCAGTATTAATGGGTTCTGCCACGCCAAGTTTAGAAAGTATTAATAATGTACAAAACGGCAAATACC
AACATTTAGTTTTATCAAAAAGAGCGGGAAATTCTACCGCACTTCGTCATTTCGTTATTGATTTGAAAAATCAAAATATA
CAAAACGGGCTTTCAAAACCCTTGTTGGAACGAATGAAAGCCCACCTCGAAAAAGGCAATCAAGTGTTGCTTTTCTTAAA
TCGTCGTGGCTTTGCGCCCGTATTGCTTTGCCATGAATGTGGTTGGATTGCACAATGCCCTCATTGTGAAAAACCTTATA
CCTATCATCAGCATCAAAATGTATTGCGTTGTCATCATTGTGGCGCACAAAAAACTATTCCTCGCCAATGTGGCGATTGC
GGTTCTACCCATTTAGTTACTACTGGTCTCGGCACAGAACAATTAGAAGAAACCTTGAAAACGCTATTTCCTCATTATTC
TGTAGCGCGAATCGACCGCGATAGCACGGCGCGTAAAGGAAAATTGGAAGGTTATTTAGAAGATATTCAACAAGGCAAAA
GCCAAATTTTGATTGGCACACAAATGCTTGCGAAAGGACATCATTTTCCGAATGTTACTCTCGTTGCCTTAGTGAATGTA
GATAGTGCATTATTTTCACTGGATTTTCGTGCAGAAGAACGTTTAGCTCAACTTTATATTCAAGTTGCTGGACGAGCAGG
ACGTGCCGATAAACAAGGTGAAGTTGTGCTACAAACACATTATCCAGATCATCCTTTGCTTACCACTTTATTGGCAAAGG
GCTACCAAGCTTTTGCAAAAGAAACCTTACAATTACGCCATTCAATGGGATTGCCGCCTTTTACTTTTCAGGCGTTATTC
AAAGCACAGGCTCGACATTCTGATCTTGCAGAAAATTGCTTAAGCCAAATTGCAGATTTTTTTCAATCGAAGCAAATTAC
GGGATTACAAATGCTTGGCCCAATGCCTGCACCGTTCAGCAAAAAAGCAGGGCAATATCGCTGGCAGTTATTATTGCAGC
ATCCGTCAAGAATCACGTTGCAAAAAGTATTGAGAGAATATCAACAAGCCGAACTTGAAAAAAACAGCCAAGTGCGGTTA
ATTTTGGACGTTGATCCGCAAGACTTATCATAA

Domains

Predicted by InterProScan.

3DNA-binding domain (3BD) (PriA_3primeBD)

(5-100)

DEAD/DEAH box helicase (DEAD)

(204-366)

Primosomal protein N C-terminal domain (PriA_C)

(633-726)

Helicase conserved C-terminal domain (Helicase_C)

(503-589)

PriA DNA helicase Cys-rich region (CRR) domain (Zn_ribbon_PriA)

(446-471)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  priA Acinetobacter baumannii D1279779

44.355

100

0.452

Multiple sequence alignment