Detailed information    

insolico Bioinformatically predicted

Overview

Name   comX   Type   Regulator
Locus tag   LLUC08_RS10945 Genome accession   NZ_CP015903
Coordinates   2226576..2226986 (-) Length   136 a.a.
NCBI ID   WP_237025755.1    Uniprot ID   A0AAC9W9T4
Organism   Lactococcus lactis subsp. lactis strain UC08     
Function   activation of late competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 2221576..2231986
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LLUC08_RS10945 (LLUC08_2119) comX 2226576..2226986 (-) 411 WP_237025755.1 sigma-70 family RNA polymerase sigma factor Regulator
  LLUC08_RS10950 (LLUC08_2120) ezrA 2227242..2228972 (-) 1731 WP_081200144.1 septation ring formation regulator EzrA -
  LLUC08_RS10955 (LLUC08_2121) tsf 2229177..2230205 (-) 1029 WP_015427183.1 translation elongation factor Ts -
  LLUC08_RS10960 (LLUC08_2122) rpsB 2230327..2231094 (-) 768 WP_010906340.1 30S ribosomal protein S2 -

Sequence

Protein


Download         Length: 136 a.a.        Molecular weight: 16353.79 Da        Isoelectric Point: 5.8637

>NTDB_id=183151 LLUC08_RS10945 WP_237025755.1 2226576..2226986(-) (comX) [Lactococcus lactis subsp. lactis strain UC08]
MTYYLEEEGFEILFSEMKPIVMKLMKQIRIRTWKIEDYLQEGMIILHLLLEEQSDGQKLHTKFKVKYHQRLIDELRRSYA
KKRSHDHFIGLDVYECSDWINSGDTSPDNEVVFNHLLAEVYEGLSAHYQDLLLRQM

Nucleotide


Download         Length: 411 bp        

>NTDB_id=183151 LLUC08_RS10945 WP_237025755.1 2226576..2226986(-) (comX) [Lactococcus lactis subsp. lactis strain UC08]
ATGACATATTACTTGGAAGAAGAGGGTTTTGAAATTCTATTTTCAGAAATGAAACCTATAGTCATGAAATTAATGAAACA
AATTCGCATTAGAACATGGAAAATAGAGGATTATCTTCAAGAGGGGATGATTATTTTACATCTTCTATTAGAAGAGCAGA
GCGATGGTCAAAAGCTGCATACAAAATTTAAGGTAAAGTATCATCAAAGATTAATAGATGAATTAAGACGAAGTTATGCA
AAGAAACGAAGCCATGACCATTTTATAGGTTTAGATGTTTATGAATGCTCAGACTGGATAAATTCAGGTGATACTAGTCC
AGATAATGAAGTGGTCTTCAATCATTTGCTGGCAGAAGTATATGAAGGTTTGAGCGCACATTATCAAGACTTACTACTTC
GACAAATGTGA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comX Lactococcus lactis subsp. lactis strain DGCC12653

97.794

100

0.978
  comX Lactococcus lactis subsp. cremoris KW2

75

100

0.75
  comX/sigX Streptococcus mutans UA159

37.121

97.059

0.36

Multiple sequence alignment