Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA   Type   Machinery gene
Locus tag   LLUC08_RS10540 Genome accession   NZ_CP015903
Coordinates   2157940..2159301 (-) Length   453 a.a.
NCBI ID   WP_003130563.1    Uniprot ID   -
Organism   Lactococcus lactis subsp. lactis strain UC08     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2152940..2164301
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LLUC08_RS10505 (LLUC08_2039) - 2153487..2153981 (+) 495 WP_012898594.1 GNAT family N-acetyltransferase -
  LLUC08_RS10510 (LLUC08_2040) - 2154074..2154343 (-) 270 WP_081200128.1 DUF1048 domain-containing protein -
  LLUC08_RS10515 (LLUC08_2041) - 2154383..2154730 (-) 348 WP_023188603.1 DUF1048 domain-containing protein -
  LLUC08_RS10520 (LLUC08_2042) - 2154717..2155079 (-) 363 WP_023188602.1 PadR family transcriptional regulator -
  LLUC08_RS10525 (LLUC08_2043) - 2155200..2155829 (-) 630 WP_023188601.1 hypothetical protein -
  LLUC08_RS10530 (LLUC08_2044) - 2155894..2156979 (-) 1086 WP_012898597.1 PIN/TRAM domain-containing protein -
  LLUC08_RS10535 (LLUC08_2045) - 2157210..2157896 (+) 687 WP_058206490.1 YoaK family protein -
  LLUC08_RS10540 (LLUC08_2046) radA 2157940..2159301 (-) 1362 WP_003130563.1 DNA repair protein RadA Machinery gene
  LLUC08_RS10545 (LLUC08_2047) - 2159463..2159690 (-) 228 WP_081200130.1 heavy-metal-associated domain-containing protein -
  LLUC08_RS10550 (LLUC08_02830) - 2159989..2160246 (-) 258 WP_080668830.1 SIS domain-containing protein -
  LLUC08_RS10555 (LLUC08_02835) - 2160222..2160476 (-) 255 WP_023188597.1 phosphoheptose isomerase -
  LLUC08_RS10565 (LLUC08_2049) rplQ 2161155..2161535 (-) 381 WP_003130558.1 50S ribosomal protein L17 -
  LLUC08_RS10570 (LLUC08_2050) - 2161554..2162492 (-) 939 WP_003130557.1 DNA-directed RNA polymerase subunit alpha -
  LLUC08_RS10575 (LLUC08_2051) rpsK 2162540..2162923 (-) 384 WP_010906297.1 30S ribosomal protein S11 -
  LLUC08_RS10580 (LLUC08_2052) rpsM 2162944..2163309 (-) 366 WP_003130555.1 30S ribosomal protein S13 -
  LLUC08_RS10585 (LLUC08_02845) rpmJ 2163327..2163443 (-) 117 WP_001808836.1 50S ribosomal protein L36 -
  LLUC08_RS10590 (LLUC08_2053) infA 2163497..2163715 (-) 219 WP_003130554.1 translation initiation factor IF-1 -

Sequence

Protein


Download         Length: 453 a.a.        Molecular weight: 49893.28 Da        Isoelectric Point: 5.1748

>NTDB_id=183139 LLUC08_RS10540 WP_003130563.1 2157940..2159301(-) (radA) [Lactococcus lactis subsp. lactis strain UC08]
MAKKKSSFVCQNCGYKSAKYLGRCPNCGEWSSFVEEVEVQEVKNQRVSMTGERSKPLKLDEVELFDTPRIETDLDEFNRV
LGGGVVPGSLVLIGGDPGIGKSTLLLQVSTQLASRGRVLYVSGEESAQQIKLRAERLGDIDRDFYLYAETNMQSIRAEVE
RLKPNFLIIDSIQTIMTPEIQSTQGSVSQVREVTGELMQIAKTNDIATFIVGHVTKEGQLAGPRMLEHMVDTVLYFEGER
NNTFRILRAVKNRFGSTNEIGIFEMQGHGLVEVTNPSEVFLEERLEGSTGSAIVCALEGTRPILVEIQALTTPTMFGNAK
RTTSGLDFNRVSLIMAVLEKRTGLLMQNQDAYLKSAGGVKLDEPAIDLAVAVAVASSYKELPTDARECFIGEIGLTGEIR
RVTRIEQRLNEAAKLGFKKVYAPKNSIVGIDIPEQIQVIGVTTLTECLKLVFG

Nucleotide


Download         Length: 1362 bp        

>NTDB_id=183139 LLUC08_RS10540 WP_003130563.1 2157940..2159301(-) (radA) [Lactococcus lactis subsp. lactis strain UC08]
ATGGCGAAGAAAAAATCATCATTTGTTTGTCAAAATTGTGGCTATAAGTCTGCAAAATACTTAGGACGTTGTCCAAACTG
TGGCGAATGGTCTTCTTTTGTTGAAGAAGTTGAAGTCCAAGAAGTTAAAAATCAACGTGTTTCAATGACTGGCGAACGTT
CAAAACCATTGAAGCTAGATGAAGTTGAATTATTTGATACTCCTCGGATTGAAACGGACCTAGATGAATTTAATCGTGTA
TTAGGAGGGGGCGTCGTTCCTGGTTCATTGGTTCTGATTGGGGGAGATCCTGGGATAGGTAAATCAACCTTACTTTTACA
GGTTTCCACTCAATTGGCTTCTAGAGGGCGTGTGCTTTATGTGAGTGGTGAAGAATCAGCCCAACAAATTAAACTAAGAG
CTGAGCGTTTAGGAGATATTGACCGTGACTTTTATCTCTATGCTGAAACAAATATGCAATCGATTCGTGCAGAAGTTGAG
CGTTTAAAACCTAACTTCTTAATTATTGATTCCATTCAAACAATCATGACACCAGAAATTCAATCAACTCAAGGCTCTGT
AAGTCAAGTTCGTGAAGTGACTGGAGAATTGATGCAAATTGCTAAAACGAATGATATTGCGACTTTTATTGTTGGTCATG
TGACTAAAGAAGGACAGCTGGCTGGGCCAAGGATGTTGGAGCACATGGTTGATACGGTGCTGTATTTTGAAGGAGAACGA
AATAATACATTTAGAATTCTTCGTGCTGTAAAAAACCGTTTTGGTTCAACTAATGAAATTGGAATTTTTGAGATGCAGGG
TCATGGCTTGGTCGAAGTGACTAATCCCTCAGAGGTCTTTTTAGAAGAACGTTTAGAGGGCTCAACTGGATCTGCAATTG
TTTGTGCACTTGAAGGAACACGGCCTATACTAGTTGAAATACAAGCACTGACGACACCGACAATGTTTGGAAATGCTAAA
AGGACGACCTCAGGCCTAGATTTTAACCGTGTAAGTTTAATTATGGCGGTGCTTGAGAAGAGAACGGGGCTCTTGATGCA
AAATCAAGATGCCTACCTCAAATCTGCGGGGGGAGTAAAATTGGATGAGCCAGCCATTGACCTCGCGGTTGCGGTTGCTG
TGGCTTCAAGTTATAAAGAACTTCCAACAGATGCGCGTGAATGTTTTATTGGTGAAATTGGTTTAACGGGTGAAATTCGT
CGGGTGACCCGAATTGAACAAAGATTAAATGAAGCTGCAAAACTAGGTTTTAAAAAAGTATATGCTCCTAAAAATTCAAT
TGTAGGGATTGATATTCCTGAACAGATTCAAGTGATTGGAGTAACAACTTTAACTGAATGTTTAAAACTAGTCTTTGGCT
AA

Domains

Predicted by InterproScan.

AAA domain (AAA_25)

(70-218)

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(8-35)

Subunit ChlI of Mg-chelatase (ChlI)

(360-425)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA Streptococcus pneumoniae Rx1

81.236

100

0.812
  radA Streptococcus pneumoniae D39

81.236

100

0.812
  radA Streptococcus pneumoniae R6

81.236

100

0.812
  radA Streptococcus pneumoniae TIGR4

81.236

100

0.812
  radA Streptococcus mitis SK321

81.236

100

0.812
  radA Streptococcus mitis NCTC 12261

81.015

100

0.81
  radA Bacillus subtilis subsp. subtilis str. 168

61.488

100

0.62

Multiple sequence alignment