Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA   Type   Machinery gene
Locus tag   LLUC06_RS11805 Genome accession   NZ_CP015902
Coordinates   2367474..2368835 (-) Length   453 a.a.
NCBI ID   WP_058203717.1    Uniprot ID   A0A9X4NNP6
Organism   Lactococcus lactis subsp. lactis strain UC06     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2362474..2373835
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LLUC06_RS11770 (LLUC06_2290) - 2363022..2363516 (+) 495 WP_012898594.1 GNAT family N-acetyltransferase -
  LLUC06_RS11775 (LLUC06_2291) - 2363609..2363932 (-) 324 WP_029344508.1 DUF1048 domain-containing protein -
  LLUC06_RS11780 (LLUC06_2292) - 2363919..2364266 (-) 348 WP_081213754.1 DUF1048 domain-containing protein -
  LLUC06_RS11785 (LLUC06_2293) - 2364253..2364615 (-) 363 WP_003129889.1 PadR family transcriptional regulator -
  LLUC06_RS11790 (LLUC06_2294) - 2364736..2365365 (-) 630 WP_003129888.1 hypothetical protein -
  LLUC06_RS11795 (LLUC06_2295) - 2365430..2366515 (-) 1086 WP_012898597.1 PIN/TRAM domain-containing protein -
  LLUC06_RS11800 (LLUC06_2296) - 2366746..2367432 (+) 687 WP_058203718.1 YoaK family protein -
  LLUC06_RS11805 (LLUC06_2297) radA 2367474..2368835 (-) 1362 WP_058203717.1 DNA repair protein RadA Machinery gene
  LLUC06_RS11810 (LLUC06_03120) - 2368997..2369225 (-) 229 Protein_2296 heavy-metal-associated domain-containing protein -
  LLUC06_RS11820 (LLUC06_2299) rplQ 2370040..2370420 (-) 381 WP_081213755.1 50S ribosomal protein L17 -
  LLUC06_RS11825 (LLUC06_2300) - 2370439..2371377 (-) 939 WP_003130557.1 DNA-directed RNA polymerase subunit alpha -
  LLUC06_RS11830 (LLUC06_2301) rpsK 2371425..2371808 (-) 384 WP_010906297.1 30S ribosomal protein S11 -
  LLUC06_RS11835 (LLUC06_2302) rpsM 2371829..2372194 (-) 366 WP_003130555.1 30S ribosomal protein S13 -
  LLUC06_RS11840 (LLUC06_03130) rpmJ 2372212..2372328 (-) 117 WP_001808836.1 50S ribosomal protein L36 -
  LLUC06_RS11845 (LLUC06_2303) infA 2372382..2372600 (-) 219 WP_003130554.1 translation initiation factor IF-1 -
  LLUC06_RS11850 (LLUC06_2304) - 2372897..2373544 (-) 648 WP_010906298.1 adenylate kinase -

Sequence

Protein


Download         Length: 453 a.a.        Molecular weight: 49911.32 Da        Isoelectric Point: 5.1748

>NTDB_id=183090 LLUC06_RS11805 WP_058203717.1 2367474..2368835(-) (radA) [Lactococcus lactis subsp. lactis strain UC06]
MAKKKSSFVCQNCGYKSAKYLGRCPNCGEWSSFVEEVEVQEVKNQRVSMTGERSKPMKLDEVELFDTPRIETDLDEFNRV
LGGGVVPGSLVLIGGDPGIGKSTLLLQVSTQLASRGRVLYVSGEESAQQIKLRAERLGDIDRDFYLYAETNMQSIRAEVE
RLKPNFLIIDSIQTIMTPEIQSTQGSVSQVREVTGELMQIAKTNDIATFIVGHVTKEGQLAGPRMLEHMVDTVLYFEGER
NNTFRILRAVKNRFGSTNEIGIFEMQGHGLVEVTNPSEVFLEERLEGSTGSAIVCALEGTRPILVEIQALTTPTMFGNAK
RTTSGLDFNRVSLIMAVLEKRTGLLMQNQDAYLKSAGGVKLDEPAIDLAVAVAVASSYKELPTDARECFIGEIGLTGEIR
RVTRIEQRLNEAAKLGFKKVYAPKNSIVGIDIPEQIQVIGVTTLTECLKLVFG

Nucleotide


Download         Length: 1362 bp        

>NTDB_id=183090 LLUC06_RS11805 WP_058203717.1 2367474..2368835(-) (radA) [Lactococcus lactis subsp. lactis strain UC06]
ATGGCGAAGAAAAAATCATCATTTGTTTGTCAAAATTGTGGCTATAAGTCTGCAAAATACTTAGGACGTTGTCCAAACTG
TGGCGAATGGTCTTCTTTTGTTGAAGAAGTTGAAGTCCAAGAAGTTAAAAATCAACGTGTTTCAATGACTGGCGAACGTT
CAAAACCAATGAAGCTAGATGAAGTTGAATTATTTGATACTCCTCGGATTGAAACGGACCTAGATGAATTTAATCGTGTA
TTAGGAGGGGGTGTCGTTCCTGGTTCATTAGTTCTGATTGGGGGAGACCCTGGGATAGGTAAATCAACCTTACTTTTACA
GGTTTCTACTCAATTGGCTTCTAGAGGGCGTGTGCTGTATGTGAGTGGTGAAGAATCAGCCCAACAAATTAAACTAAGAG
CTGAGCGTTTAGGAGATATTGACCGTGACTTTTATCTCTATGCTGAAACAAATATGCAGTCGATTCGTGCAGAAGTTGAG
CGTTTAAAACCTAACTTCTTAATTATTGATTCCATTCAAACAATCATGACACCAGAAATTCAATCAACTCAAGGCTCTGT
AAGTCAAGTTCGTGAAGTGACTGGAGAATTGATGCAAATTGCTAAAACGAATGATATTGCGACTTTTATTGTTGGTCATG
TGACTAAAGAAGGACAGCTGGCTGGGCCAAGGATGTTGGAGCACATGGTTGATACGGTGCTGTATTTTGAAGGAGAACGA
AATAATACATTTAGAATTCTTCGTGCTGTAAAAAACCGTTTTGGTTCAACTAATGAAATTGGAATTTTTGAGATGCAGGG
TCATGGCTTGGTCGAAGTGACTAATCCCTCAGAGGTCTTTTTAGAAGAACGCTTAGAGGGCTCAACTGGATCTGCAATTG
TTTGTGCACTTGAAGGAACACGGCCTATACTAGTTGAAATACAAGCACTGACGACACCGACAATGTTTGGAAATGCTAAA
AGGACGACCTCAGGCCTAGATTTTAACCGTGTAAGTTTAATTATGGCGGTGCTTGAAAAGAGAACGGGGCTCTTGATGCA
AAATCAAGATGCCTACCTCAAATCTGCGGGGGGAGTAAAATTGGATGAGCCAGCCATTGACCTCGCGGTTGCGGTTGCTG
TGGCTTCAAGTTATAAAGAACTTCCAACAGATGCGCGTGAATGTTTTATTGGTGAAATTGGTTTAACGGGTGAAATTCGT
CGGGTGACCCGAATTGAACAAAGATTAAATGAAGCTGCAAAACTAGGTTTTAAAAAAGTATATGCTCCTAAAAATTCAAT
TGTAGGGATTGATATTCCTGAACAGATTCAAGTGATTGGAGTAACAACTTTAACTGAATGTTTAAAACTAGTCTTTGGCT
AA

Domains

Predicted by InterproScan.

AAA domain (AAA_25)

(70-218)

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(8-35)

Subunit ChlI of Mg-chelatase (ChlI)

(360-425)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA Streptococcus pneumoniae Rx1

81.457

100

0.815
  radA Streptococcus pneumoniae D39

81.457

100

0.815
  radA Streptococcus pneumoniae R6

81.457

100

0.815
  radA Streptococcus pneumoniae TIGR4

81.457

100

0.815
  radA Streptococcus mitis SK321

81.457

100

0.815
  radA Streptococcus mitis NCTC 12261

81.236

100

0.812
  radA Bacillus subtilis subsp. subtilis str. 168

61.488

100

0.62

Multiple sequence alignment