Detailed information    

insolico Bioinformatically predicted

Overview

Name   luxS   Type   Regulator
Locus tag   BV085_RS02970 Genome accession   NZ_CP020007
Coordinates   598904..599407 (+) Length   167 a.a.
NCBI ID   WP_005662536.1    Uniprot ID   -
Organism   Haemophilus influenzae strain 48P153H1     
Function   induction of competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 593904..604407
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  BV085_RS02930 (BV085_596) atpF 594116..594586 (-) 471 WP_005649414.1 F0F1 ATP synthase subunit B -
  BV085_RS02935 (BV085_597) atpE 594636..594890 (-) 255 WP_005629249.1 F0F1 ATP synthase subunit C -
  BV085_RS02940 (BV085_598) atpB 594946..595734 (-) 789 WP_005686967.1 F0F1 ATP synthase subunit A -
  BV085_RS02945 (BV085_599) - 595762..596136 (-) 375 WP_005686968.1 ATP synthase subunit I -
  BV085_RS02950 (BV085_600) rsmG 596255..596866 (-) 612 WP_005686970.1 16S rRNA (guanine(527)-N(7))-methyltransferase RsmG -
  BV085_RS02955 (BV085_601) - 597006..597383 (-) 378 WP_005686972.1 PRD domain-containing protein -
  BV085_RS02960 (BV085_603) - 597499..598101 (+) 603 WP_005686974.1 beta-phosphoglucomutase family hydrolase -
  BV085_RS02965 (BV085_604) - 598101..598574 (+) 474 WP_005656551.1 YqaA family protein -
  BV085_RS02970 (BV085_605) luxS 598904..599407 (+) 504 WP_005662536.1 S-ribosylhomocysteine lyase Regulator
  BV085_RS09240 - 599714..599908 (+) 195 WP_228840878.1 helix-turn-helix domain-containing protein -
  BV085_RS09410 - 600167..600279 (+) 113 Protein_554 IS3 family transposase -
  BV085_RS02980 (BV085_606) aphA 600326..601033 (-) 708 WP_005649426.1 acid phosphatase AphA -
  BV085_RS02985 (BV085_607) hslV 601253..601780 (+) 528 WP_005662532.1 ATP-dependent protease subunit HslV -
  BV085_RS02990 (BV085_608) hslU 601791..603125 (+) 1335 WP_042593308.1 HslU--HslV peptidase ATPase subunit -
  BV085_RS02995 (BV085_609) - 603195..604247 (-) 1053 WP_005686979.1 extracellular solute-binding protein -

Sequence

Protein


Download         Length: 167 a.a.        Molecular weight: 18571.22 Da        Isoelectric Point: 4.9925

>NTDB_id=183022 BV085_RS02970 WP_005662536.1 598904..599407(+) (luxS) [Haemophilus influenzae strain 48P153H1]
MPLLDSFKVDHTKMNAPAVRIAKTMRTPKGDNITVFDLRFCIPNKEILSPKGIHTLEHLFAGFMRDHLNGDSIEIIDISP
MGCRTGFYMSLIGTPNEQEVSEAWLASMQDVLGVQDQASIPELNIYQCGSYTEHSLEDAHEIAKNVIARGIGVNKNEDLS
LDNSLLK

Nucleotide


Download         Length: 504 bp        

>NTDB_id=183022 BV085_RS02970 WP_005662536.1 598904..599407(+) (luxS) [Haemophilus influenzae strain 48P153H1]
ATGCCATTACTTGATAGTTTTAAAGTGGATCACACAAAAATGAACGCACCTGCAGTACGCATTGCAAAAACGATGCGCAC
GCCAAAAGGCGATAATATTACTGTTTTTGATTTACGTTTTTGTATTCCAAACAAAGAAATTCTTTCCCCAAAAGGCATTC
ATACACTTGAACATTTATTTGCTGGATTTATGCGCGATCACTTAAATGGCGATAGCATAGAAATTATTGATATTTCTCCG
ATGGGATGTCGCACGGGATTTTATATGTCTTTGATTGGCACACCAAATGAACAGGAAGTATCTGAGGCTTGGTTAGCTTC
AATGCAAGATGTTTTAGGTGTACAAGATCAAGCTTCTATTCCCGAATTAAATATCTATCAATGCGGAAGCTATACGGAAC
ATTCCTTAGAAGATGCACACGAAATTGCCAAAAATGTTATCGCACGCGGTATAGGTGTAAATAAAAATGAAGATTTGTCA
CTCGATAATTCCTTATTAAAATAG

Domains

Predicted by InterProScan.

S-Ribosylhomocysteinase (LuxS) (LuxS)

(4-153)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  luxS Vibrio cholerae strain A1552

74.096

99.401

0.737

Multiple sequence alignment