Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilC   Type   Machinery gene
Locus tag   AT729_RS11075 Genome accession   NZ_CP015886
Coordinates   1933230..1936331 (+) Length   1033 a.a.
NCBI ID   WP_079889575.1    Uniprot ID   -
Organism   Neisseria meningitidis strain 38277     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1928230..1941331
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AT729_RS11030 (AT729_01874) hpaC 1928524..1929024 (-) 501 WP_002226700.1 4-hydroxyphenylacetate 3-monooxygenase, reductase component -
  AT729_RS11035 (AT729_01875) nadR 1929139..1929579 (-) 441 WP_002221507.1 MarR family adhesin repressor NadR -
  AT729_RS11045 (AT729_01876) - 1929922..1930431 (-) 510 WP_002224078.1 protein disulfide oxidoreductase -
  AT729_RS11055 (AT729_01878) apbC 1930796..1931875 (+) 1080 WP_079889663.1 iron-sulfur cluster carrier protein ApbC -
  AT729_RS11075 (AT729_01879) pilC 1933230..1936331 (+) 3102 WP_079889575.1 PilC family type IV pilus tip adhesin Machinery gene
  AT729_RS11105 (AT729_01880) carA 1938658..1939791 (+) 1134 WP_002238352.1 glutamine-hydrolyzing carbamoyl-phosphate synthase small subunit -
  AT729_RS11110 (AT729_01881) - 1939837..1939974 (+) 138 WP_002214606.1 VOC family protein -
  AT729_RS11125 (AT729_01882) - 1940535..1940924 (+) 390 WP_002219820.1 DUF559 domain-containing protein -

Sequence

Protein


Download         Length: 1033 a.a.        Molecular weight: 112819.62 Da        Isoelectric Point: 9.7572

>NTDB_id=182805 AT729_RS11075 WP_079889575.1 1933230..1936331(+) (pilC) [Neisseria meningitidis strain 38277]
MNKTLKRQVFRHTALYAAILMFSHTGGGGGAMAQTHKYAIIMNERNQPEVKGNGQYSTIKDKGREREYTHHKYKMGGGSV
SFNNSDELVSRQSGTAVFGTATYLPPYGKVSGFDDKRLKERGNAVNWIHTTHPGLIGYSYAGVVCRDSTGCPKLVYKTRF
SFDNTGLAKNAGSLDRHPDPSRDNSPIYKLKDHPWLGVSFNLGSENTVKNGNSFNRLISSFNENNNNQTIVSTTESSPIS
LGDQQREHTAVVYYLNAKLHLLDKKGIKDITNKTVRLGVLKPSIDVKTQKTGTAGILSFWANWDIKDTGQIPVKLDLQQV
KAGRCINKQNPNPKSQAPSPALTAPALWFGPVQNGKVQMYSASVSTYPDSSSSRIFLQNLKRKDDPNKPGRHSLEPLNDT
QIKSKEPTFTGRQTIIRLDDGVREIKLDKSNEVTGLNGNDGKNDTFGIVSEGSFTPDVSEWKKVLLPWTVRGSADDGRFK
SINQESSKYSQRYRIRENGNNSKRDLGDIVNSPIVAVGEYLATSANDGMVHIFKKNGGSDERSYNLKLSYIPGTMPRKDI
ENKDSTLAKELRAFAEKGYVGDRYGVDGGFVLRKVERNGKDHVFMFGAMGFGGRGAYALDLSKIDSGNGNLADVSLFDVK
HDKNGNNGVKLGYTVGTPQIGKTHNGKYAAFLASGYATKDINNGENKTALYVYDLENNNGTPIAKIEVPNGKGGLSSPTL
VDKDLDGTIDIAYAGDRGGNMYRFDLSSDNPSSWTVRTIFQGTKPITSAPAISQLKDKRVVIFGTGSDLSEDDVLSTSEQ
YIYGIFDDDTATTGSVNFSGLGGGLLEQELKQEGKTLFLTDYKRSDGSGNKGWVVKLKDGQRVTVKPTVVLRTAFVTIHK
YTGTDKCGAETAILGINTADGGKLTKKSARPIVPEANQAVAQYSGHKQTAKGKSIPIGCMQKGNEIVCPNGYVYDKPVNV
RYLDEKKTDGFSTTADGDAGGSGIDPDGKRSGKNNRCFSQKGVRTLLMNDLDSLDITGPTCGMKRISWREVFF

Nucleotide


Download         Length: 3102 bp        

>NTDB_id=182805 AT729_RS11075 WP_079889575.1 1933230..1936331(+) (pilC) [Neisseria meningitidis strain 38277]
ATGAATAAAACTTTAAAAAGGCAGGTTTTCCGCCATACCGCGCTTTATGCCGCCATCTTGATGTTTTCCCATACCGGCGG
GGGGGGGGGGGCGATGGCGCAAACCCATAAATACGCTATTATCATGAACGAGCGAAACCAGCCCGAGGTAAAGGGGAATG
GGCAATATTCAACAATAAAGGACAAAGGCAGGGAGCGCGAATATACTCATCATAAGTACAAAATGGGAGGAGGCTCTGTC
TCATTCAACAATAGCGATGAGCTTGTTTCCCGACAAAGCGGTACTGCCGTTTTTGGCACAGCCACCTACCTGCCGCCCTA
CGGCAAGGTTTCCGGTTTTGATGACAAAAGGCTGAAAGAGCGCGGCAATGCCGTTAATTGGATTCATACGACCCACCCAG
GGTTGATAGGCTACAGCTACGCCGGTGTCGTATGCAGAGACAGCACAGGCTGTCCCAAACTTGTCTATAAAACCCGATTT
TCCTTCGACAACACCGGTTTGGCAAAAAATGCGGGCAGCCTGGATAGGCACCCGGACCCAAGCCGCGACAATTCGCCCAT
TTACAAATTGAAAGATCATCCATGGTTGGGCGTATCTTTCAATTTGGGCAGCGAGAATACCGTCAAAAATGGCAACTCAT
TCAACAGATTGATATCTTCTTTTAATGAAAACAATAATAATCAAACCATCGTCTCTACGACAGAAAGCTCCCCTATTTCC
CTTGGCGACCAGCAGCGCGAACATACCGCCGTGGTCTATTATCTGAACGCCAAACTGCACCTGCTGGACAAAAAAGGGAT
TAAAGATATCACCAACAAAACAGTGCGGTTGGGTGTCTTGAAGCCGAGCATCGATGTGAAGACACAAAAGACGGGGACTG
CCGGCATTCTATCTTTTTGGGCTAATTGGGACATTAAAGATACCGGGCAGATTCCAGTCAAGCTCGACCTGCAGCAAGTC
AAAGCAGGCCGCTGCATCAACAAACAGAACCCAAATCCCAAATCCCAAGCCCCTTCCCCCGCACTGACTGCCCCCGCGCT
GTGGTTCGGACCTGTGCAAAATGGTAAGGTGCAGATGTATTCCGCTTCGGTTTCCACCTACCCCGACAGTTCGAGCAGCC
GCATCTTCCTTCAAAATCTGAAAAGAAAAGACGACCCCAACAAACCCGGCCGCCATTCCCTCGAACCCTTGAATGATACG
CAGATTAAAAGTAAAGAGCCGACTTTCACAGGGCGGCAAACAATCATCCGATTGGATGACGGCGTACGTGAGATCAAACT
GGATAAAAGCAATGAGGTCACCGGTTTAAATGGAAATGACGGCAAAAACGACACTTTCGGCATTGTTAGTGAAGGGAGCT
TCACGCCTGATGTCAGCGAGTGGAAAAAAGTGCTGCTGCCTTGGACGGTTCGGGGTTCTGCTGATGACGGTCGATTTAAA
TCAATTAACCAAGAATCAAGCAAATACAGCCAAAGATACCGCATCCGCGAAAACGGCAACAATAGCAAGCGTGATTTGGG
CGACATCGTCAACAGCCCCATCGTGGCGGTCGGCGAATATCTAGCTACTTCCGCCAACGACGGGATGGTGCATATCTTCA
AAAAAAACGGCGGCAGTGATGAACGCAGCTACAATCTGAAGCTCAGCTACATCCCCGGCACGATGCCGCGCAAGGATATT
GAAAACAAAGACTCCACCCTCGCCAAAGAGCTGCGCGCCTTTGCCGAAAAAGGCTATGTGGGCGACCGCTACGGCGTGGA
CGGCGGCTTTGTCTTGCGCAAAGTCGAACGGAACGGGAAAGACCATGTGTTTATGTTCGGCGCGATGGGCTTTGGCGGCA
GAGGCGCGTATGCCTTGGATTTAAGCAAAATCGACAGCGGCAACGGCAACCTGGCAGACGTTTCCCTGTTTGATGTCAAA
CATGACAAGAATGGCAATAACGGCGTGAAATTAGGCTACACCGTCGGCACGCCGCAAATCGGCAAAACCCACAACGGCAA
ATACGCCGCCTTCCTCGCCTCCGGTTATGCGACTAAAGACATTAACAACGGCGAGAATAAAACCGCGCTGTATGTGTATG
ATTTGGAAAACAACAACGGTACGCCGATTGCAAAAATCGAAGTACCCAACGGCAAGGGCGGGCTTTCGTCCCCCACGTTG
GTGGATAAAGATTTGGACGGCACGATCGATATCGCCTATGCCGGCGATCGCGGCGGGAATATGTACCGCTTTGATTTGAG
CAGCGACAATCCGTCCAGCTGGACTGTACGCACTATTTTCCAAGGCACGAAGCCGATTACTTCCGCGCCCGCCATTTCCC
AACTGAAAGACAAACGCGTGGTTATCTTCGGCACGGGCAGTGATTTGAGTGAGGATGATGTACTCAGTACGAGCGAACAA
TATATTTACGGTATCTTCGACGACGATACGGCGACGACGGGTAGTGTAAACTTCAGCGGTTTGGGAGGCGGGCTGCTCGA
GCAAGAGCTTAAGCAGGAGGGTAAAACCTTATTCCTGACCGATTATAAGCGATCCGACGGCTCGGGCAATAAGGGCTGGG
TAGTGAAATTGAAGGACGGACAGCGCGTTACCGTCAAACCGACCGTGGTATTGCGTACCGCCTTTGTAACCATCCATAAA
TATACGGGTACGGACAAATGCGGCGCGGAAACCGCCATTTTGGGCATCAATACCGCCGACGGCGGCAAGCTGACCAAGAA
AAGCGCGCGCCCGATTGTGCCGGAAGCCAATCAGGCTGTCGCGCAATATTCCGGCCATAAGCAAACCGCCAAAGGCAAAT
CCATCCCTATAGGTTGTATGCAAAAAGGCAATGAAATCGTCTGCCCGAACGGATATGTTTACGACAAACCGGTTAATGTG
CGTTATCTGGATGAAAAGAAAACAGACGGATTTTCAACAACGGCAGACGGTGATGCGGGCGGCAGCGGTATAGACCCCGA
CGGCAAGCGTTCCGGCAAAAACAACCGCTGCTTCTCCCAAAAAGGGGTGCGCACCCTGCTGATGAACGATTTGGACAGCT
TGGACATTACCGGCCCGACGTGCGGTATGAAACGAATCAGCTGGCGTGAAGTCTTCTTCTGA

Domains

Predicted by InterproScan.

Neisseria PilC beta-propeller domain (T4P_PilY1)

(506-840)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilC Neisseria meningitidis A1493

79.159

100

0.802

Multiple sequence alignment