Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA   Type   Machinery gene
Locus tag   AT729_RS08885 Genome accession   NZ_CP015886
Coordinates   1555298..1556677 (-) Length   459 a.a.
NCBI ID   WP_079889531.1    Uniprot ID   -
Organism   Neisseria meningitidis strain 38277     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1550298..1561677
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AT729_RS08870 (AT729_01495) recB 1550494..1554108 (+) 3615 WP_002219521.1 exodeoxyribonuclease V subunit beta Machinery gene
  AT729_RS08875 (AT729_01496) - 1554147..1554506 (+) 360 WP_002219522.1 rhodanese-like domain-containing protein -
  AT729_RS08880 (AT729_01497) - 1554748..1555227 (+) 480 WP_002219523.1 DUF302 domain-containing protein -
  AT729_RS08885 (AT729_01498) radA 1555298..1556677 (-) 1380 WP_079889531.1 DNA repair protein RadA Machinery gene
  AT729_RS08890 (AT729_01499) hemE 1556855..1557919 (-) 1065 WP_002241348.1 uroporphyrinogen decarboxylase -
  AT729_RS08895 (AT729_01500) - 1557994..1559211 (-) 1218 WP_002219526.1 heme biosynthesis protein HemY -
  AT729_RS08900 (AT729_01501) - 1559208..1560542 (-) 1335 WP_002223907.1 uroporphyrinogen-III C-methyltransferase -
  AT729_RS08905 (AT729_01502) - 1560557..1561318 (-) 762 WP_002223909.1 uroporphyrinogen-III synthase -

Sequence

Protein


Download         Length: 459 a.a.        Molecular weight: 49605.10 Da        Isoelectric Point: 7.0604

>NTDB_id=182795 AT729_RS08885 WP_079889531.1 1555298..1556677(-) (radA) [Neisseria meningitidis strain 38277]
MAKTLKTLYQCTECGGTSPKWQGKCPHCGEWNTLQESLAAPEPKNARFQSWAADTSTVQSLSSVTATEVPRNPTGMGELD
RVLGGGLVDGAVILLGGDPGIGKSTLLLQTIAKMAQSRKVLYVSGEESAQQVALRAQRLELPTEGVNLLAEIRMEAIQTA
LKQHQPEVVVIDSIQTMYSDQITSAPGSVSQVRECAAQLTRMAKQMGIAMILVGHVTKDGAIAGPRVLEHMVDTVLYFEG
DQHSNYRMIRAIKNRFGAANELGVFAMTENGLKGVSNPSAIFLASYRDDTPGSCVLVTQEGSRPLLVEIQALVDDAHGFT
PKRLTVGLEQNRLAMLLAVLNRHGGIACFDQDVFLNAVGGVKIGEPAADLAVILAMLSSFRNRPLPEKMVAFGEIGLSGE
VRPVARGQERLKEAEKLGFKRAIVPKANMPRNAKEFPNLKIYGVSSLQEAIDICREDRD

Nucleotide


Download         Length: 1380 bp        

>NTDB_id=182795 AT729_RS08885 WP_079889531.1 1555298..1556677(-) (radA) [Neisseria meningitidis strain 38277]
ATGGCAAAAACGCTTAAAACCCTTTACCAATGCACCGAATGCGGCGGCACTTCCCCGAAATGGCAGGGCAAATGCCCGCA
TTGCGGCGAGTGGAACACGCTTCAGGAAAGCCTGGCCGCGCCCGAGCCGAAAAACGCCCGTTTCCAATCTTGGGCGGCGG
ACACCTCGACCGTCCAATCCCTCTCCTCCGTGACCGCCACCGAAGTGCCGCGCAATCCGACCGGCATGGGCGAACTCGAC
CGCGTATTGGGCGGCGGTTTGGTCGATGGTGCGGTCATCCTGCTCGGCGGCGACCCCGGCATCGGCAAATCCACGCTGTT
GTTGCAAACCATCGCCAAAATGGCGCAAAGCCGTAAAGTGCTGTACGTTTCCGGCGAGGAATCCGCTCAACAAGTCGCCC
TGCGCGCGCAACGTTTGGAGCTGCCCACCGAAGGCGTGAACCTGCTTGCCGAAATCCGCATGGAAGCGATTCAGACGGCC
TTGAAACAGCATCAACCCGAAGTCGTGGTTATCGATTCCATCCAAACTATGTATTCCGACCAAATCACTTCCGCCCCCGG
CTCCGTGTCGCAGGTGCGCGAATGCGCCGCCCAACTGACGCGCATGGCGAAACAAATGGGCATCGCCATGATACTGGTCG
GACACGTGACCAAAGACGGCGCGATTGCCGGTCCGCGCGTGTTGGAGCATATGGTCGATACCGTGCTGTATTTCGAGGGA
GACCAGCATTCCAACTACCGTATGATACGCGCCATCAAAAACCGCTTCGGCGCGGCAAACGAACTGGGCGTGTTCGCGAT
GACGGAAAACGGTTTGAAAGGTGTGTCCAACCCGTCCGCCATCTTCCTTGCCAGCTACCGCGACGACACGCCCGGTTCGT
GCGTTTTGGTTACGCAGGAAGGCAGCCGACCGCTTTTGGTTGAAATTCAGGCATTGGTCGATGACGCGCACGGATTCACC
CCCAAACGCCTTACCGTCGGACTGGAACAAAACCGCCTCGCGATGCTGCTCGCCGTGTTAAACCGACACGGCGGCATCGC
CTGTTTCGATCAGGATGTGTTCCTCAACGCCGTCGGTGGCGTGAAAATCGGCGAACCGGCGGCGGATTTGGCAGTCATCC
TCGCGATGCTTTCCAGCTTCCGCAACCGCCCGCTGCCCGAAAAAATGGTTGCATTTGGAGAAATCGGTTTGAGCGGTGAA
GTCCGCCCCGTCGCGCGCGGACAAGAGCGGCTCAAAGAAGCGGAAAAACTCGGCTTCAAACGCGCCATCGTCCCCAAAGC
CAATATGCCGCGCAACGCCAAAGAGTTTCCGAACCTGAAAATCTACGGCGTTTCGAGTTTGCAGGAAGCCATTGATATTT
GTCGGGAAGATAGGGATTGA

Domains

Predicted by InterproScan.

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(9-36)

Subunit ChlI of Mg-chelatase (ChlI)

(366-428)

AAA domain (AAA_25)

(80-220)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA Bacillus subtilis subsp. subtilis str. 168

50.33

99.129

0.499
  radA Streptococcus mitis NCTC 12261

47.672

98.257

0.468
  radA Streptococcus pneumoniae Rx1

47.345

98.475

0.466
  radA Streptococcus pneumoniae D39

47.345

98.475

0.466
  radA Streptococcus pneumoniae R6

47.345

98.475

0.466
  radA Streptococcus pneumoniae TIGR4

47.345

98.475

0.466
  radA Streptococcus mitis SK321

47.228

98.257

0.464

Multiple sequence alignment