Detailed information    

insolico Bioinformatically predicted

Overview

Name   recC   Type   Machinery gene
Locus tag   AT729_RS03335 Genome accession   NZ_CP015886
Coordinates   580984..584193 (+) Length   1069 a.a.
NCBI ID   WP_079889395.1    Uniprot ID   -
Organism   Neisseria meningitidis strain 38277     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 575984..589193
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AT729_RS03310 (AT729_00545) ccoO 576940..577551 (+) 612 WP_002212596.1 cytochrome-c oxidase, cbb3-type subunit II -
  AT729_RS03315 (AT729_00546) - 577556..577726 (+) 171 WP_002212597.1 CcoQ/FixQ family Cbb3-type cytochrome c oxidase assembly chaperone -
  AT729_RS03320 (AT729_00547) ccoP 577750..579085 (+) 1336 Protein_537 cytochrome-c oxidase, cbb3-type subunit III -
  AT729_RS03330 (AT729_00548) - 579473..580882 (+) 1410 WP_079889394.1 PepSY-associated TM helix domain-containing protein -
  AT729_RS03335 (AT729_00549) recC 580984..584193 (+) 3210 WP_079889395.1 exodeoxyribonuclease V subunit gamma Machinery gene
  AT729_RS03340 (AT729_00550) mtrF 584263..585831 (-) 1569 WP_002224346.1 AbgT family antimetabolite efflux transporter MtrF -
  AT729_RS03345 (AT729_00551) - 586164..586376 (+) 213 WP_002235133.1 hypothetical protein -
  AT729_RS03350 (AT729_00552) mtrR 586655..587289 (-) 635 Protein_542 multidrug efflux system transcriptional repressor MtrR -
  AT729_RS13820 - 587379..587537 (+) 159 WP_162051245.1 hypothetical protein -
  AT729_RS03355 (AT729_00553) mtrC 587693..588931 (+) 1239 WP_002223500.1 multidrug efflux RND transporter periplasmic adaptor subunit MtrC -

Sequence

Protein


Download         Length: 1069 a.a.        Molecular weight: 120672.18 Da        Isoelectric Point: 4.7540

>NTDB_id=182779 AT729_RS03335 WP_079889395.1 580984..584193(+) (recC) [Neisseria meningitidis strain 38277]
MFYLYQSNRLETLAALFARIQKVKPLKSALQPEQIIVQSQGMRRYLNTCLARDLGVAANLSFSLPAGLTWKLMKKLIPGI
PELSPFAPEVMRWRLLDLFRSEAFRNTAEFEDVRNVLQDYLGSGESADYQLAGQLADIFDQYLVYRPQWIDAWQQGRILG
LGDDEIWQSKLWRYLDDGRQSAPHRVALWEKLLESLSSDKLPERYFVFGISTMAPMYLQLLHKLSEHCDVFVFALNPSGM
YWGNVIEAAQILKGGGDPDLTQAGHPLLASLGKQGRDFFDFLNEMEIEEETPVFEEGSRDTLLHALQTDIQNLKMPSENV
GSVNTGDGSIRIVSAHSPLRELQILKDKLLKILHEHPDWQPHDIAVLTPNIESYTPFIEAVFGQAQPGAQALPYSVSDVK
ISRRQPLFHALSCLFDLLESRFEVDKVLALLETAPVLRRFGLTEDDLPLLHDMVADLNVRWGLDGEMRGGTDQLFTWKQA
VERMILGWMLPEGGNPMWQDVSAWYADVNQTALFGRFAALLETLSDIVRIWQQPATIGEWVARCRDLLETLFQAEADDQK
SVQNLENEWVKWQAETELAQFSGQLPQQTVIRHIRRFLDSESEAGFLRGGITFCSMVPMRSLPFKVICLLGLNDGDFPRN
TKAAVFDLIAKHPAKGDRARRDDDRYLFLEALISAREILYLSYIGRDIRKDEELAPSSLLGELIDTVAAMTGTNSRQLAQ
NLIEQHPLQAFSRRYFQEGGRSDGIFGTRTDYAAALGQTPEPPQPFFDQPVENAEPVAEIGQDEFIRFWRNPVKVWLQQQ
LAWSEPHIGEAWEPAEPFEPQHADQIAETYIEARREGRDFAQTAARIGAESLLPSGELGRLWQQDFQTAAKQIDTAVLNS
PKLPPLSYAIPSDGQILKGSLGNLYRCGQVFYAYGKPNAPQRIAFLLEHLIFCAVMPSEAETRQTFIVQSGETEILAEIA
QDRALQLLSEWMAFFNIGQNRPLPFFAKTSLATAEAFAQKQDWEAALKKAQTAYHGNKVSKGQKDYTEVALVFGNASQNP
LEQPLFENLVRLLADTFAAAEKKEEAGAA

Nucleotide


Download         Length: 3210 bp        

>NTDB_id=182779 AT729_RS03335 WP_079889395.1 580984..584193(+) (recC) [Neisseria meningitidis strain 38277]
ATGTTTTATCTGTATCAATCCAACCGTCTTGAAACGCTGGCGGCACTGTTTGCCCGCATTCAAAAAGTCAAACCGCTGAA
ATCGGCTTTACAGCCCGAACAGATTATTGTGCAGAGTCAGGGGATGCGCCGCTACCTCAATACCTGCCTCGCCCGCGATT
TGGGCGTGGCGGCGAACTTGTCGTTCAGCCTGCCCGCCGGCCTGACGTGGAAGCTGATGAAAAAACTGATTCCCGGTATT
CCGGAACTCAGCCCGTTTGCGCCCGAAGTGATGCGCTGGCGGCTGCTGGATTTGTTCCGCAGCGAGGCATTCCGGAATAC
GGCAGAATTTGAAGATGTGAGGAATGTGCTGCAAGACTATCTGGGCAGCGGCGAATCGGCGGATTATCAGCTTGCTGGCC
AGCTTGCAGACATATTTGACCAATACCTCGTGTATCGTCCGCAGTGGATAGACGCGTGGCAGCAGGGCAGGATACTCGGT
TTGGGCGACGATGAAATCTGGCAGTCCAAACTGTGGCGTTACCTCGACGATGGCAGGCAGAGCGCGCCGCACCGTGTCGC
GTTGTGGGAAAAGCTGTTGGAATCTTTAAGCAGTGATAAGCTGCCCGAGCGTTATTTCGTGTTCGGCATTTCCACGATGG
CGCCGATGTATTTGCAACTTTTGCACAAGCTGTCCGAACATTGCGACGTGTTCGTGTTCGCACTCAATCCGAGCGGGATG
TATTGGGGCAATGTCATCGAAGCGGCGCAAATCCTCAAAGGCGGCGGCGATCCCGATTTAACTCAGGCAGGGCATCCGCT
GCTCGCCTCATTGGGCAAGCAGGGGCGGGACTTTTTCGACTTTTTGAACGAAATGGAAATAGAAGAAGAAACGCCGGTGT
TTGAAGAAGGCAGCCGCGATACGCTTTTGCACGCCCTGCAAACCGATATTCAAAACCTGAAAATGCCGTCTGAAAATGTG
GGAAGCGTCAACACGGGCGACGGCTCGATACGCATCGTCTCCGCACACAGCCCCTTGCGCGAATTGCAGATACTCAAAGA
CAAGCTGTTGAAAATTCTGCATGAACATCCCGATTGGCAGCCGCATGATATCGCCGTATTAACCCCGAACATCGAATCCT
ATACGCCTTTTATCGAAGCCGTGTTCGGACAGGCGCAGCCCGGTGCGCAGGCATTGCCGTATTCCGTTTCGGACGTGAAA
ATAAGCCGCCGACAACCGCTGTTTCATGCTTTGTCATGCCTGTTCGACTTGTTGGAAAGCCGATTTGAAGTCGATAAAGT
GCTCGCGCTTTTAGAAACCGCACCCGTGTTGCGCCGTTTCGGACTGACTGAGGACGATTTGCCGCTTTTGCACGACATGG
TTGCCGATTTGAACGTCCGCTGGGGTTTGGACGGAGAAATGCGCGGCGGCACGGATCAGCTGTTTACCTGGAAGCAGGCG
GTAGAACGCATGATATTGGGCTGGATGCTGCCCGAAGGCGGCAATCCGATGTGGCAGGATGTCAGCGCGTGGTATGCCGA
CGTGAACCAAACCGCCCTGTTCGGACGTTTTGCCGCCCTCCTCGAAACCCTGTCGGATATTGTACGGATATGGCAGCAGC
CCGCAACGATCGGCGAATGGGTGGCGCGTTGCCGGGATTTGCTTGAAACATTGTTCCAAGCTGAAGCCGATGACCAAAAG
TCAGTCCAAAACCTTGAAAACGAATGGGTCAAATGGCAGGCGGAAACAGAATTGGCGCAATTTTCCGGACAGTTGCCGCA
ACAAACCGTCATCCGCCACATCCGCCGCTTTCTCGACAGCGAAAGCGAGGCAGGCTTTTTACGCGGCGGCATCACCTTTT
GCAGTATGGTACCGATGCGGAGCCTGCCCTTTAAAGTCATCTGTCTGTTGGGTTTGAACGACGGAGATTTTCCCCGCAAT
ACCAAAGCCGCCGTATTCGACCTGATTGCCAAACATCCCGCCAAAGGCGACCGCGCCCGTCGCGATGACGACCGCTACCT
GTTCCTTGAAGCTCTCATCAGCGCGCGTGAAATCCTGTATTTGTCCTACATCGGGCGCGATATCCGCAAAGACGAAGAGC
TTGCCCCGTCTTCGCTGTTGGGCGAACTCATCGACACAGTTGCCGCCATGACCGGCACAAACAGCCGCCAACTTGCACAA
AACCTGATAGAACAGCATCCGCTGCAAGCCTTCTCGCGCCGATATTTTCAAGAAGGCGGACGTTCAGACGGCATATTCGG
CACGCGTACCGACTACGCCGCCGCGCTCGGACAAACGCCCGAACCGCCGCAACCCTTTTTCGACCAACCCGTAGAAAACG
CCGAACCTGTTGCCGAAATCGGACAGGACGAATTTATCCGTTTCTGGCGCAACCCCGTCAAAGTATGGCTTCAGCAGCAG
CTTGCGTGGAGCGAACCCCATATCGGCGAAGCCTGGGAGCCTGCCGAACCCTTCGAGCCGCAACACGCCGATCAAATCGC
CGAAACCTACATCGAAGCACGGCGCGAAGGACGGGATTTTGCCCAAACCGCCGCCCGCATCGGGGCGGAAAGCCTCCTGC
CGTCGGGAGAGTTGGGCAGACTTTGGCAGCAGGACTTCCAAACTGCTGCCAAACAAATCGACACGGCGGTTTTAAACAGC
CCCAAACTGCCACCGCTTTCATATGCCATACCGTCGGACGGGCAAATCCTGAAAGGCAGCTTGGGCAATCTGTACCGCTG
CGGACAAGTGTTTTACGCCTACGGCAAACCCAACGCGCCGCAACGTATCGCTTTTCTGCTGGAACACCTGATATTTTGCG
CCGTTATGCCGTCTGAAGCCGAAACGCGGCAAACCTTTATCGTCCAATCCGGAGAAACCGAAATATTGGCGGAAATCGCG
CAAGACAGGGCATTGCAGCTATTGTCGGAATGGATGGCGTTTTTCAATATCGGGCAAAACCGCCCGCTGCCGTTTTTTGC
CAAAACCTCGCTTGCCACCGCCGAAGCGTTTGCCCAAAAACAAGATTGGGAAGCCGCCCTGAAAAAAGCCCAAACCGCCT
ACCACGGCAACAAAGTCAGCAAAGGGCAGAAAGACTATACCGAAGTCGCCCTCGTGTTCGGCAACGCAAGCCAAAACCCG
CTCGAACAGCCCCTGTTTGAAAACCTCGTCCGTCTGCTTGCCGACACGTTTGCCGCAGCGGAAAAAAAGGAAGAGGCCGG
AGCAGCCTGA

Domains

Predicted by InterproScan.

RecC C-terminal domain (RecC_C)

(778-997)

Exodeoxyribonuclease V, gamma subunit (Exonuc_V_gamma)

(2-312)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recC Neisseria gonorrhoeae strain FA1090

94.013

100

0.94

Multiple sequence alignment