Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilV   Type   Machinery gene
Locus tag   A9C11_RS19265 Genome accession   NZ_CP015878
Coordinates   4458792..4459337 (-) Length   181 a.a.
NCBI ID   WP_064583599.1    Uniprot ID   A0A1A9KEQ3
Organism   Pseudomonas citronellolis strain SJTE-3     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 4453792..4464337
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  A9C11_RS19255 (A9C11_19250) - 4457476..4458018 (-) 543 WP_064583597.1 pilus assembly PilX family protein -
  A9C11_RS19260 (A9C11_19255) - 4458015..4458791 (-) 777 WP_064583598.1 PilW family protein -
  A9C11_RS19265 (A9C11_19260) pilV 4458792..4459337 (-) 546 WP_064583599.1 type IV pilus modification protein PilV Machinery gene
  A9C11_RS19270 (A9C11_19265) - 4459334..4459837 (-) 504 WP_081884545.1 GspH/FimT family pseudopilin -
  A9C11_RS19275 (A9C11_19270) - 4460318..4461667 (-) 1350 WP_064583600.1 MFS transporter -
  A9C11_RS19280 (A9C11_19275) - 4461846..4462688 (-) 843 WP_043266799.1 IclR family transcriptional regulator domain-containing protein -
  A9C11_RS19285 (A9C11_19280) zapE 4462927..4463997 (-) 1071 WP_064583601.1 cell division protein ZapE -

Sequence

Protein


Download         Length: 181 a.a.        Molecular weight: 18909.54 Da        Isoelectric Point: 4.8548

>NTDB_id=182708 A9C11_RS19265 WP_064583599.1 4458792..4459337(-) (pilV) [Pseudomonas citronellolis strain SJTE-3]
MTRRGLAGFSLIEVLVALLVICVGVLGMLAMQGRAIAYSQDMAVRGTAAALADELMETLRTDLYSTQDAGTPLTPPASSD
YYKATGSAFPAAPSSCASLASLSASQRLGCWAQRVQQALPDAASLMSSDFHICRSNGASTCSGTGSAIEIQLAWRVKSGE
CLEASPGSDPTICHYVLREEP

Nucleotide


Download         Length: 546 bp        

>NTDB_id=182708 A9C11_RS19265 WP_064583599.1 4458792..4459337(-) (pilV) [Pseudomonas citronellolis strain SJTE-3]
ATGACGCGCCGTGGCCTGGCCGGCTTCAGCCTGATCGAAGTGCTGGTGGCGCTGCTGGTGATCTGCGTCGGCGTGCTGGG
CATGCTCGCCATGCAGGGCAGGGCGATCGCCTATTCCCAGGACATGGCGGTGCGCGGCACGGCGGCGGCGCTGGCCGACG
AGCTGATGGAGACCCTCCGCACCGACCTCTATTCCACCCAGGACGCCGGCACGCCGCTGACCCCGCCGGCCAGCTCCGAC
TACTACAAGGCCACCGGCAGCGCCTTCCCCGCAGCACCGAGCAGTTGTGCCTCGCTCGCTTCGCTGAGCGCCTCGCAGCG
CCTGGGCTGCTGGGCGCAGCGGGTGCAGCAGGCGCTGCCCGATGCCGCCAGCCTGATGAGCAGCGACTTCCACATCTGCC
GCAGCAACGGCGCCAGCACCTGCAGCGGCACCGGCTCGGCCATTGAAATCCAGCTGGCCTGGCGGGTGAAGTCCGGCGAG
TGCCTGGAGGCCAGCCCCGGCAGCGACCCGACCATCTGCCACTACGTGCTGCGCGAGGAGCCCTGA

Domains

Predicted by InterproScan.

Prokaryotic N-terminal methylation motif (N_methyl)

(7-28)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A1A9KEQ3

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilV Pseudomonas aeruginosa PAK

49.162

98.895

0.486

Multiple sequence alignment