Detailed information    

insolico Bioinformatically predicted

Overview

Name   dprB   Type   Machinery gene
Locus tag   B4W62_RS05785 Genome accession   NZ_CP019977
Coordinates   1141781..1142161 (-) Length   126 a.a.
NCBI ID   WP_002776373.1    Uniprot ID   A0ABN0ERI9
Organism   Campylobacter coli strain aerotolerant OR12     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1136781..1147161
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  B4W62_RS05760 aspS 1137294..1139045 (+) 1752 WP_002784258.1 aspartate--tRNA ligase -
  B4W62_RS05765 - 1139042..1139617 (+) 576 WP_002776379.1 adenylate kinase -
  B4W62_RS05770 ppa 1139627..1140145 (+) 519 WP_002776378.1 inorganic diphosphatase -
  B4W62_RS05775 msrA 1140193..1140693 (+) 501 WP_002776375.1 peptide-methionine (S)-S-oxide reductase MsrA -
  B4W62_RS05780 - 1140916..1141770 (-) 855 WP_370300696.1 RsmB/NOP family class I SAM-dependent RNA methyltransferase -
  B4W62_RS05785 dprB 1141781..1142161 (-) 381 WP_002776373.1 Holliday junction resolvase RuvX Machinery gene
  B4W62_RS05790 dprA 1142158..1142928 (-) 771 WP_002776372.1 DNA-processing protein DprA Machinery gene
  B4W62_RS05795 - 1142918..1143970 (-) 1053 WP_002776371.1 divergent polysaccharide deacetylase family protein -
  B4W62_RS05800 ilvC 1143973..1144995 (-) 1023 WP_002776360.1 ketol-acid reductoisomerase -
  B4W62_RS05805 - 1145118..1147052 (+) 1935 WP_002776352.1 RNB domain-containing ribonuclease -

Sequence

Protein


Download         Length: 126 a.a.        Molecular weight: 13949.38 Da        Isoelectric Point: 9.5520

>NTDB_id=182708 B4W62_RS05785 WP_002776373.1 1141781..1142161(-) (dprB) [Campylobacter coli strain aerotolerant OR12]
MRALALDVGLKRIGVALCIDKIAIPLEGIIRKNRNQAANEVKNLLQIHDISLLIVGIPKGGSSEEEMTRRIKHFVSLLEF
DKEIRFVDESGTSKEALGYGVANTRKKDAKLDSLAALIMIKDYFGI

Nucleotide


Download         Length: 381 bp        

>NTDB_id=182708 B4W62_RS05785 WP_002776373.1 1141781..1142161(-) (dprB) [Campylobacter coli strain aerotolerant OR12]
ATGAGAGCTTTGGCCTTAGATGTGGGTTTAAAGCGTATAGGCGTGGCGCTTTGTATAGATAAAATCGCCATTCCTTTAGA
AGGTATAATCAGAAAAAACCGCAACCAAGCTGCAAATGAAGTTAAAAATTTACTTCAAATTCATGATATTTCTTTATTGA
TTGTAGGTATTCCTAAGGGAGGATCGAGCGAAGAAGAAATGACAAGGCGTATCAAGCATTTTGTATCTTTGCTTGAATTC
GATAAAGAAATTCGCTTTGTAGATGAAAGCGGAACAAGTAAAGAAGCTTTAGGATATGGTGTGGCTAATACACGCAAAAA
AGATGCCAAGCTAGACTCTTTAGCAGCTTTAATCATGATAAAGGATTATTTTGGAATATAA

Domains

Predicted by InterProScan.

Holliday junction resolvase (RuvX)

(1-124)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  dprB Helicobacter pylori 26695

42.063

100

0.421

Multiple sequence alignment