Detailed information    

insolico Bioinformatically predicted

Overview

Name   luxS   Type   Regulator
Locus tag   B4W62_RS03040 Genome accession   NZ_CP019977
Coordinates   603828..604322 (-) Length   164 a.a.
NCBI ID   WP_002786475.1    Uniprot ID   -
Organism   Campylobacter coli strain aerotolerant OR12     
Function   induction of competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 598828..609322
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  B4W62_RS03020 metE 599449..601713 (-) 2265 WP_002781301.1 5-methyltetrahydropteroyltriglutamate-- homocysteine S-methyltransferase -
  B4W62_RS03025 - 601736..602506 (-) 771 WP_002781303.1 MetQ/NlpA family ABC transporter substrate-binding protein -
  B4W62_RS03030 - 602520..603512 (-) 993 WP_002788130.1 isopenicillin N synthase family dioxygenase -
  B4W62_RS03040 luxS 603828..604322 (-) 495 WP_002786475.1 S-ribosylhomocysteine lyase Regulator
  B4W62_RS03045 gatB 604437..605855 (+) 1419 WP_002786474.1 Asp-tRNA(Asn)/Glu-tRNA(Gln) amidotransferase subunit GatB -
  B4W62_RS03050 - 605855..606754 (+) 900 WP_002777349.1 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase -
  B4W62_RS03055 - 606763..607944 (+) 1182 WP_002786473.1 metal-dependent hydrolase -

Sequence

Protein


Download         Length: 164 a.a.        Molecular weight: 18331.19 Da        Isoelectric Point: 5.0135

>NTDB_id=182695 B4W62_RS03040 WP_002786475.1 603828..604322(-) (luxS) [Campylobacter coli strain aerotolerant OR12]
MPLLDSFKVDHTKMPAPAVRLAKTMKTPKGDDISVFDLRFCIPNKDIMSEKGTHTLEHLFAGFMRDHLNSDLVEIIDISP
MGCRTGFYMSLIGTPDEKSVAKAWEASMKDILNVSDQSQIPELNIYQCGTCAMHSLDEAKEIAQKVLNSTIGIMNNEELK
LENI

Nucleotide


Download         Length: 495 bp        

>NTDB_id=182695 B4W62_RS03040 WP_002786475.1 603828..604322(-) (luxS) [Campylobacter coli strain aerotolerant OR12]
ATGCCATTACTTGATAGTTTTAAAGTAGATCATACCAAAATGCCAGCACCCGCTGTGCGTTTAGCTAAAACAATGAAGAC
ACCAAAAGGCGATGATATTAGCGTATTTGACTTGCGTTTTTGCATACCCAATAAAGACATCATGAGTGAAAAAGGTACGC
ATACACTAGAACACTTATTTGCAGGTTTTATGAGAGATCATTTAAATTCGGATTTGGTTGAAATCATCGACATTTCGCCT
ATGGGATGTCGCACAGGTTTTTATATGAGTTTAATTGGCACACCTGATGAAAAAAGTGTTGCTAAAGCTTGGGAAGCCTC
AATGAAAGATATTTTAAATGTGAGCGATCAAAGTCAAATTCCTGAACTCAATATCTATCAATGTGGAACTTGTGCTATGC
ATTCTTTGGATGAAGCAAAAGAAATTGCACAAAAAGTTTTAAATTCTACCATAGGCATAATGAACAACGAAGAATTAAAA
CTTGAAAATATCTAA

Domains

Predicted by InterProScan.

S-Ribosylhomocysteinase (LuxS) (LuxS)

(4-154)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  luxS Vibrio cholerae strain A1552

71.429

98.171

0.701