Detailed information    

insolico Bioinformatically predicted

Overview

Name   exbB   Type   Machinery gene
Locus tag   A214_RS23420 Genome accession   NZ_CP015877
Coordinates   5131986..5132621 (-) Length   211 a.a.
NCBI ID   WP_003091163.1    Uniprot ID   A0A0H2ZBU7
Organism   Pseudomonas aeruginosa SJTD-1     
Function   ssDNA transport through the inner membrane (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 5126986..5137621
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  A214_RS23390 (A214_23385) murB 5128084..5129103 (-) 1020 WP_017149173.1 UDP-N-acetylmuramate dehydrogenase -
  A214_RS23395 (A214_23390) - 5129100..5129564 (-) 465 WP_003091154.1 low molecular weight protein-tyrosine-phosphatase -
  A214_RS23400 (A214_23395) kdsB 5129564..5130328 (-) 765 WP_003091155.1 3-deoxy-manno-octulosonate cytidylyltransferase -
  A214_RS23405 (A214_23400) - 5130328..5130513 (-) 186 WP_003091157.1 Trm112 family protein -
  A214_RS23410 (A214_23405) lpxK 5130551..5131549 (-) 999 WP_003091159.1 tetraacyldisaccharide 4'-kinase -
  A214_RS23415 (A214_23410) - 5131549..5131989 (-) 441 WP_003091161.1 ExbD/TolR family protein -
  A214_RS23420 (A214_23415) exbB 5131986..5132621 (-) 636 WP_003091163.1 MotA/TolQ/ExbB proton channel family protein Machinery gene
  A214_RS23425 (A214_23420) comA 5132694..5134919 (-) 2226 WP_016562089.1 DNA internalization-related competence protein ComEC/Rec2 Machinery gene
  A214_RS23430 (A214_23425) - 5135050..5135583 (+) 534 WP_003091165.1 DUF2062 domain-containing protein -
  A214_RS23435 (A214_23430) - 5135671..5136915 (-) 1245 WP_003105198.1 lipoprotein-releasing ABC transporter permease subunit -

Sequence

Protein


Download         Length: 211 a.a.        Molecular weight: 22890.06 Da        Isoelectric Point: 6.7278

>NTDB_id=182679 A214_RS23420 WP_003091163.1 5131986..5132621(-) (exbB) [Pseudomonas aeruginosa SJTD-1]
MWELVQAGGWMMLPIILSSIAATAIVAERLWTLRKSRVAPPELLGQVWKQIKGKQLSAQKLKDLRANSPLGEILAAGLAN
SKHGREIMKECIEEAASGVIHELERYLNALGTIAAMAPLLGLLGTVFGMIQIFGAFMDNGMANSPMLAAGISKALITTAA
GLLVAIPAVFFHRYLLRRVDELVIAMEQEAIKLVEVVQGDREVDYVEEGKA

Nucleotide


Download         Length: 636 bp        

>NTDB_id=182679 A214_RS23420 WP_003091163.1 5131986..5132621(-) (exbB) [Pseudomonas aeruginosa SJTD-1]
GTGTGGGAACTGGTTCAAGCCGGCGGCTGGATGATGCTGCCGATCATTCTGAGTTCGATCGCCGCCACCGCCATCGTCGC
GGAGCGCCTGTGGACGCTGCGCAAGAGCCGCGTCGCGCCGCCCGAGCTGCTCGGCCAGGTGTGGAAGCAGATCAAGGGCA
AGCAACTGAGCGCCCAGAAGCTCAAGGACCTGCGCGCCAACTCGCCGCTGGGAGAGATCCTCGCCGCCGGTCTGGCCAAC
TCCAAGCACGGTCGCGAGATCATGAAGGAGTGCATCGAGGAGGCTGCTTCCGGTGTCATCCACGAGCTGGAGCGCTACCT
CAACGCCCTCGGCACCATCGCCGCGATGGCGCCGCTGCTGGGCCTGCTGGGTACGGTGTTCGGCATGATCCAGATCTTCG
GCGCCTTCATGGACAACGGCATGGCCAACTCGCCGATGCTTGCCGCGGGCATCTCCAAGGCATTGATCACCACCGCCGCC
GGCCTGCTGGTGGCGATTCCGGCGGTGTTCTTCCATCGCTACCTGCTGCGGCGGGTCGACGAACTGGTGATCGCCATGGA
GCAGGAGGCCATCAAGCTGGTGGAAGTGGTGCAGGGCGATCGTGAAGTCGACTACGTCGAGGAAGGCAAAGCGTGA

Domains

Predicted by InterproScan.

MotA/TolQ/ExbB proton channel family (MotA_ExbB)

(66-188)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A0H2ZBU7

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  exbB Pseudomonas stutzeri DSM 10701

81.043

100

0.81

Multiple sequence alignment