Detailed information    

insolico Bioinformatically predicted

Overview

Name   dprB   Type   Machinery gene
Locus tag   B2K12_RS03105 Genome accession   NZ_CP019965
Coordinates   599080..599463 (+) Length   127 a.a.
NCBI ID   WP_002871352.1    Uniprot ID   -
Organism   Campylobacter jejuni strain NCTC12662     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 594080..604463
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  B2K12_RS03085 (B2K12_03085) - 594159..596093 (-) 1935 WP_044305911.1 ribonuclease R family protein -
  B2K12_RS03090 (B2K12_03090) ilvC 596212..597234 (+) 1023 WP_044305912.1 ketol-acid reductoisomerase -
  B2K12_RS03095 (B2K12_03095) - 597238..598320 (+) 1083 WP_044305913.1 divergent polysaccharide deacetylase family protein -
  B2K12_RS03100 (B2K12_03100) dprA 598310..599083 (+) 774 WP_044305914.1 DNA-processing protein DprA Machinery gene
  B2K12_RS03105 (B2K12_03105) dprB 599080..599463 (+) 384 WP_002871352.1 Holliday junction resolvase RuvX Machinery gene
  B2K12_RS03110 (B2K12_03110) - 599492..600331 (+) 840 WP_079005346.1 RsmB/NOP family class I SAM-dependent RNA methyltransferase -
  B2K12_RS03115 (B2K12_03115) msrA 600507..601004 (-) 498 WP_002855174.1 peptide-methionine (S)-S-oxide reductase MsrA -
  B2K12_RS03120 (B2K12_03120) ppa 601045..601563 (-) 519 WP_002855031.1 inorganic diphosphatase -
  B2K12_RS03125 (B2K12_03125) adk 601573..602151 (-) 579 WP_002855137.1 adenylate kinase -
  B2K12_RS03130 (B2K12_03130) aspS 602148..603899 (-) 1752 WP_012006668.1 aspartate--tRNA ligase -

Sequence

Protein


Download         Length: 127 a.a.        Molecular weight: 14146.63 Da        Isoelectric Point: 9.0848

>NTDB_id=182640 B2K12_RS03105 WP_002871352.1 599080..599463(+) (dprB) [Campylobacter jejuni strain NCTC12662]
MRALALDVGLKRIGVALCVDKKIALPLDAVLRKNRNQAANEIKNLLKIHEISLLIVGIPKGGSSEEEMTRRIKHFVSLLE
FDKEICFVDESGTSKEALEYGVANTRKKDGKLDSLSAFIMIKDYFAL

Nucleotide


Download         Length: 384 bp        

>NTDB_id=182640 B2K12_RS03105 WP_002871352.1 599080..599463(+) (dprB) [Campylobacter jejuni strain NCTC12662]
ATGAGAGCTTTGGCTTTAGATGTAGGTTTAAAACGCATAGGTGTAGCGCTTTGCGTAGATAAAAAGATCGCTTTGCCTTT
AGATGCAGTTTTAAGAAAAAATCGCAATCAAGCCGCCAATGAAATCAAAAATTTACTTAAAATACATGAAATTTCTTTAC
TCATTGTAGGCATTCCTAAGGGTGGATCAAGCGAAGAAGAAATGACAAGACGCATTAAGCATTTTGTTTCTTTGCTTGAA
TTTGATAAAGAAATTTGCTTTGTAGATGAAAGTGGAACAAGTAAAGAAGCTTTAGAATACGGTGTAGCCAATACACGCAA
AAAAGATGGTAAATTAGACTCTTTATCCGCTTTTATCATGATAAAGGATTATTTTGCTCTCTAG

Domains

Predicted by InterProScan.

Holliday junction resolvase (RuvX)

(1-125)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  dprB Helicobacter pylori 26695

45.669

100

0.457

Multiple sequence alignment