Detailed information    

insolico Bioinformatically predicted

Overview

Name   exbB   Type   Machinery gene
Locus tag   A210_RS19725 Genome accession   NZ_CP015876
Coordinates   4386297..4386932 (-) Length   211 a.a.
NCBI ID   WP_003247132.1    Uniprot ID   A0AAD2WBR1
Organism   Pseudomonas putida SJTE-1     
Function   ssDNA transport through the inner membrane (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 4381297..4391932
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  A210_RS19695 (A210_19680) murB 4382394..4383413 (-) 1020 WP_014754071.1 UDP-N-acetylmuramate dehydrogenase -
  A210_RS19700 (A210_19685) - 4383410..4383874 (-) 465 WP_014754072.1 low molecular weight protein-tyrosine-phosphatase -
  A210_RS19705 (A210_19690) kdsB 4383874..4384638 (-) 765 WP_003247143.1 3-deoxy-manno-octulosonate cytidylyltransferase -
  A210_RS19710 (A210_19695) - 4384635..4384820 (-) 186 WP_003247142.1 Trm112 family protein -
  A210_RS19715 (A210_19700) lpxK 4384865..4385866 (-) 1002 WP_003247136.1 tetraacyldisaccharide 4'-kinase -
  A210_RS19720 (A210_19705) - 4385866..4386300 (-) 435 WP_014754073.1 ExbD/TolR family protein -
  A210_RS19725 (A210_19710) exbB 4386297..4386932 (-) 636 WP_003247132.1 MotA/TolQ/ExbB proton channel family protein Machinery gene
  A210_RS19730 (A210_19715) comA 4387088..4389304 (-) 2217 WP_017147836.1 DNA internalization-related competence protein ComEC/Rec2 Machinery gene
  A210_RS27980 - 4389447..4389953 (+) 507 Protein_3962 DUF2062 domain-containing protein -
  A210_RS19735 (A210_19720) - 4389963..4390742 (-) 780 WP_003247128.1 ABC transporter permease -
  A210_RS19740 (A210_19725) - 4390739..4391671 (-) 933 WP_014754076.1 ABC transporter ATP-binding protein -

Sequence

Protein


Download         Length: 211 a.a.        Molecular weight: 22873.20 Da        Isoelectric Point: 7.3616

>NTDB_id=182638 A210_RS19725 WP_003247132.1 4386297..4386932(-) (exbB) [Pseudomonas putida SJTE-1]
MWELVKSGGWMMLPIILSSIVAMAIVVERLWTLRASRVTPPHLLGQVWMWIKDKQLTSDKLKALRADSPLGEILAAGLAN
SRHGREIMKECIEEAASRVIHELERYISTLGTIAAMAPLLGLLGTVLGMIDIFSAFMGSQMTANAAVLAGGISKALVTTA
AGLMVGIPAVFFHRFLLRRIDELVVGMEQEAIKLVEVIQGDREVEVAGGKA

Nucleotide


Download         Length: 636 bp        

>NTDB_id=182638 A210_RS19725 WP_003247132.1 4386297..4386932(-) (exbB) [Pseudomonas putida SJTE-1]
GTGTGGGAATTGGTCAAGTCCGGTGGTTGGATGATGCTGCCGATCATTCTGAGTTCCATCGTTGCCATGGCTATCGTCGT
CGAGCGCCTGTGGACCCTGCGTGCCAGCCGCGTCACCCCGCCCCACCTGCTGGGCCAGGTGTGGATGTGGATCAAGGACA
AGCAACTGACCAGTGACAAGCTCAAGGCACTGCGGGCCGATTCGCCACTGGGCGAAATCCTGGCAGCGGGCCTCGCCAAC
TCGCGCCATGGTCGCGAAATCATGAAAGAGTGCATCGAGGAGGCCGCCTCGCGCGTCATCCACGAACTGGAACGCTACAT
CAGCACCCTCGGCACCATTGCCGCCATGGCGCCTCTGCTGGGCCTGCTGGGCACCGTGCTGGGCATGATCGACATTTTCA
GCGCCTTCATGGGCTCGCAGATGACTGCCAACGCCGCCGTGCTGGCCGGTGGTATCTCCAAGGCCCTGGTCACCACTGCG
GCAGGCCTGATGGTTGGTATCCCGGCGGTGTTCTTCCACCGCTTCCTGCTGCGCCGCATCGATGAGCTGGTGGTCGGCAT
GGAGCAGGAGGCGATCAAGCTGGTGGAAGTGATCCAGGGCGACCGTGAAGTGGAAGTGGCCGGAGGCAAGGCGTGA

Domains

Predicted by InterproScan.

MotA/TolQ/ExbB proton channel family (MotA_ExbB)

(66-188)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  exbB Pseudomonas stutzeri DSM 10701

82.464

100

0.825

Multiple sequence alignment