Detailed information    

insolico Bioinformatically predicted

Overview

Name   chiS   Type   Regulator
Locus tag   A8140_RS12820 Genome accession   NZ_CP015863
Coordinates   2676351..2679737 (+) Length   1128 a.a.
NCBI ID   WP_005531775.1    Uniprot ID   -
Organism   Vibrio campbellii CAIM 519 = NBRC 15631 = ATCC 25920 strain ATCC 25920 CAIM 519T     
Function   chitin sensor (predicted from homology)   
Competence regulation

Genomic Context

Location: 2671351..2684737
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  A8140_RS12790 (A8140_12165) erpA 2671693..2672034 (-) 342 WP_005425270.1 iron-sulfur cluster insertion protein ErpA -
  A8140_RS12795 (A8140_12170) hemL 2672281..2673576 (+) 1296 WP_005425271.1 glutamate-1-semialdehyde 2,1-aminomutase -
  A8140_RS12805 (A8140_12175) - 2673936..2675021 (+) 1086 WP_005425277.1 AI-2E family transporter -
  A8140_RS12810 (A8140_12180) rsmC 2675098..2676123 (+) 1026 WP_005531776.1 16S rRNA (guanine(1207)-N(2))-methyltransferase RsmC -
  A8140_RS12820 (A8140_12185) chiS 2676351..2679737 (+) 3387 WP_005531775.1 response regulator Regulator
  A8140_RS12825 (A8140_12190) - 2680559..2682241 (+) 1683 WP_005531772.1 ABC transporter substrate-binding protein -
  A8140_RS12830 (A8140_12195) - 2682412..2683398 (+) 987 WP_005531770.1 ABC transporter permease -
  A8140_RS12835 (A8140_12200) - 2683401..2684426 (+) 1026 WP_005531769.1 ABC transporter permease -

Sequence

Protein


Download         Length: 1128 a.a.        Molecular weight: 127304.05 Da        Isoelectric Point: 5.2929

>NTDB_id=182591 A8140_RS12820 WP_005531775.1 2676351..2679737(+) (chiS) [Vibrio campbellii CAIM 519 = NBRC 15631 = ATCC 25920 strain ATCC 25920 CAIM 519T]
MFKFYKKQKFKRLQSTLMTAFLVLSITPLTITAIFFLQSHSKDLEEQSTSHLLSVRDTKQQQIIDYFAAQETEVMGFVRS
ELAYASGGRFYGLVNAFSRLGHDIDEARENAQQRYIKGSGDQIKTSILPESSNYVGSERYRLLHKRYHWAYLELLKRSDF
NDILLVDIDGNVTYSINKDDNFGTNLLSGRYKDTALGKTFKRLSEDVSARRKVNEDYTPVVVSDFDIENGKQVAWLGAPI
IQQGYLHSYAMFRLPNNGITKLIAEINRDSSIDTLLIGSDHKPRTINTKQEDIQNSLEIVDKALAGETEVGTYSNRLGEE
MIAAFAPIETRGLTWALVVQLPEKEAFARVHQLEKLFVIAMLIAIILVVIASHYLSNFITSPLLKLTWAAEKVSAGDLDE
TTFNTERKDEIGRLAISFERMQRSIREKIQTIKQQNEELESNIKLIQKQNEELQLADKLKDEFLATTSHELRTPLHGMVG
IAETLVSGANGAIPASQKYQLDIIIKSGQRLANLVDDLLDYHKMRYGSMDIQKSAVSLASATRLVLELSGHLLGNKTIRI
INQVPADLKAVSADPQRLEQVLYNLIGNAIKYTSEGKIVISATVVDDQVRVQVVDTGQGIPAEHLEHIFEPLIQAGQDAS
RYRQGAGLGLSISRQLIELMGGSLYVSSQPMVGTTFSFTLPLASEEEIKATESLAARGHFQIPEANFDNNDDLSLPENPD
GPLLYVADDEPVNLRVLESFLRLEGYRVRTISDGPETLALIEQEKPELLLLDIMMPGMSGYQVCSELRETYDHAELPIIM
LTALSQTEDRVRGFEAGANDYLTKPFNKQELAARIQAHLTASQAEMRHIENKLLESELRQRAEVEASLLETQGRLLEQLE
SAPEAIICLREDQRIRFANEAACKLFKRSLEQLKRSSADELIAPKFLTVKQPHYCGKIDIYIEDIRQNIEADILKLPEGS
GLDVMYIFNVGGGANAARIHNLETAVEVLSSYAFDGDKDQLQKLKELGGEFTRLADKALGNKKDKQELMREVLVDTMTHA
LEYWESVTGETKFAFAEQSGLWRVYLDRSTLQTRTLDKYMRIETLPKTPRWRTVLSSIEFILEHCKEQSPERAYIEAQRD
KMQRLLTS

Nucleotide


Download         Length: 3387 bp        

>NTDB_id=182591 A8140_RS12820 WP_005531775.1 2676351..2679737(+) (chiS) [Vibrio campbellii CAIM 519 = NBRC 15631 = ATCC 25920 strain ATCC 25920 CAIM 519T]
ATGTTTAAATTCTACAAAAAGCAGAAATTTAAGCGACTGCAAAGCACGCTAATGACCGCGTTTTTGGTTCTTAGTATTAC
GCCACTGACGATAACTGCTATTTTCTTCCTCCAATCCCACAGTAAAGATTTGGAAGAACAGAGCACATCCCATTTACTCT
CAGTCCGTGATACCAAACAACAACAGATCATCGACTACTTTGCAGCTCAAGAAACCGAAGTTATGGGCTTTGTTCGCTCA
GAGTTGGCTTATGCCAGTGGCGGACGATTCTACGGTTTGGTCAATGCCTTTAGCCGATTAGGCCACGATATCGATGAAGC
AAGAGAGAATGCACAGCAACGCTATATCAAAGGCAGCGGCGATCAAATCAAAACGTCGATTTTGCCAGAATCTTCCAACT
ACGTTGGCAGTGAACGTTATCGTCTTTTGCATAAACGTTATCACTGGGCTTACCTCGAGCTATTAAAACGCTCTGATTTC
AACGATATTTTATTAGTTGATATCGACGGTAACGTTACTTATTCAATCAATAAAGATGATAACTTTGGCACCAACCTCCT
CAGCGGCCGTTACAAAGACACCGCTTTGGGAAAAACATTTAAACGCCTCTCCGAGGATGTAAGCGCGCGCCGAAAAGTGA
ATGAAGATTACACGCCTGTCGTGGTATCCGACTTTGACATTGAAAACGGTAAGCAAGTCGCTTGGTTGGGTGCGCCTATT
ATTCAGCAAGGCTATCTGCACAGCTATGCAATGTTCCGCTTGCCGAACAATGGCATCACAAAGCTGATTGCAGAGATCAA
TCGTGACTCTTCAATTGATACCTTATTAATTGGCAGTGACCACAAACCTCGTACCATCAACACCAAGCAAGAAGACATCC
AAAACAGTTTAGAGATCGTCGACAAAGCTTTAGCTGGCGAAACGGAAGTGGGCACATACAGCAACCGTTTAGGCGAAGAG
ATGATTGCAGCATTTGCACCTATTGAGACTCGCGGTCTCACTTGGGCTCTCGTTGTACAGCTTCCTGAGAAAGAGGCCTT
TGCACGTGTCCATCAGCTCGAGAAACTGTTTGTCATTGCGATGCTAATAGCGATCATCTTGGTTGTGATTGCTTCACACT
ACTTATCTAATTTCATCACATCTCCGCTGCTTAAGCTGACTTGGGCAGCGGAGAAAGTATCTGCTGGCGATCTGGACGAA
ACCACCTTTAATACCGAACGTAAAGATGAAATCGGTCGACTAGCGATCAGCTTTGAGCGTATGCAGCGCTCAATTCGTGA
AAAGATCCAAACCATCAAGCAACAAAACGAAGAGCTAGAGAGCAACATCAAACTGATCCAAAAGCAAAACGAAGAATTGC
AGTTGGCAGATAAGCTGAAAGATGAATTCCTAGCGACAACCTCTCACGAGTTACGCACACCATTGCACGGTATGGTTGGC
ATTGCAGAGACACTGGTGTCTGGTGCAAATGGCGCGATACCTGCGAGCCAGAAGTACCAATTGGACATCATCATCAAGAG
TGGTCAGCGCCTAGCAAACCTCGTTGATGATCTATTGGATTACCACAAGATGCGCTACGGCAGCATGGATATCCAAAAGT
CTGCAGTGAGCCTAGCCAGTGCAACACGCTTGGTGCTGGAGCTTTCTGGTCACCTATTGGGTAACAAAACCATCCGCATC
ATTAATCAAGTGCCAGCGGATCTGAAAGCAGTCTCAGCAGATCCTCAGCGTTTGGAACAAGTGCTGTATAACTTAATTGG
CAACGCTATTAAGTACACTTCAGAAGGCAAAATCGTTATCTCAGCGACCGTTGTAGACGATCAAGTCCGAGTACAAGTGG
TCGATACTGGTCAGGGTATTCCAGCTGAACACCTAGAGCATATCTTCGAACCTCTTATCCAAGCAGGTCAAGATGCTAGT
CGCTACCGCCAAGGTGCAGGTCTAGGTCTATCAATCAGCCGTCAACTTATCGAGTTGATGGGCGGTTCATTATATGTCAG
CAGCCAACCTATGGTCGGAACGACATTCAGCTTCACCTTGCCACTCGCTAGTGAAGAAGAAATCAAAGCGACGGAAAGCC
TTGCCGCTCGCGGGCATTTCCAAATTCCAGAAGCGAACTTTGACAACAATGACGACTTGTCTCTACCTGAAAACCCAGAT
GGTCCATTGCTGTACGTTGCTGATGATGAGCCCGTCAACCTGCGCGTTCTTGAAAGCTTCTTAAGACTTGAAGGCTACCG
AGTTCGTACCATTTCAGACGGCCCTGAGACACTCGCTTTAATTGAACAAGAGAAGCCTGAGTTGCTGCTACTGGATATTA
TGATGCCAGGCATGAGTGGCTATCAGGTTTGTAGTGAACTGCGTGAAACTTACGATCATGCAGAGCTGCCAATCATTATG
CTCACAGCGCTAAGCCAAACCGAAGACCGCGTTAGGGGCTTTGAAGCGGGAGCGAACGATTACCTAACCAAACCATTTAA
TAAGCAAGAGCTCGCGGCACGTATTCAGGCCCACTTGACGGCAAGTCAGGCTGAAATGCGCCACATCGAGAACAAGTTAC
TGGAATCGGAGCTACGCCAGCGTGCTGAAGTCGAAGCCAGCCTGCTCGAGACACAAGGTAGACTGCTAGAACAGCTAGAA
TCGGCACCTGAGGCGATTATTTGTCTTCGTGAAGATCAACGTATTCGCTTTGCAAACGAAGCAGCATGTAAGCTATTTAA
ACGTAGCCTAGAACAGCTAAAACGTTCTTCCGCTGATGAGCTAATTGCACCTAAGTTCCTTACGGTTAAGCAGCCGCACT
ACTGTGGCAAGATTGATATCTACATCGAAGATATTCGTCAAAACATTGAAGCAGACATCCTCAAGCTGCCTGAAGGCTCT
GGTTTAGATGTCATGTATATCTTCAATGTAGGAGGCGGAGCGAATGCAGCTCGTATCCATAACCTAGAGACGGCAGTTGA
AGTACTTTCAAGTTACGCATTTGATGGTGATAAAGACCAGCTGCAGAAGCTGAAAGAACTTGGCGGTGAGTTTACTCGCC
TTGCTGATAAAGCATTGGGTAACAAGAAGGACAAACAAGAGCTGATGCGCGAAGTATTAGTCGATACGATGACTCATGCA
TTGGAATATTGGGAATCGGTGACTGGAGAAACCAAGTTTGCCTTTGCTGAACAAAGTGGTTTATGGCGCGTCTACCTCGA
CCGCAGTACATTGCAAACACGTACGCTCGATAAATACATGCGTATTGAGACTTTGCCTAAGACACCGCGCTGGAGGACAG
TACTAAGCTCAATTGAGTTCATTCTGGAGCACTGTAAAGAACAAAGCCCAGAACGCGCCTACATAGAGGCACAGCGCGAT
AAGATGCAAAGACTCCTTACGAGCTAA

Domains

Predicted by InterproScan.

Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase (HATPase_c)

(574-683)

Response regulator receiver domain (Response_reg)

(726-836)

HAMP domain (HAMP)

(375-427)

His Kinase A (phospho-acceptor) domain (HisKA)

(460-525)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  chiS Vibrio cholerae strain A1552

76.794

100

0.769

Multiple sequence alignment