Detailed information    

insolico Bioinformatically predicted

Overview

Name   luxO   Type   Regulator
Locus tag   A8140_RS10935 Genome accession   NZ_CP015863
Coordinates   2280330..2281733 (-) Length   467 a.a.
NCBI ID   WP_005531399.1    Uniprot ID   -
Organism   Vibrio campbellii CAIM 519 = NBRC 15631 = ATCC 25920 strain ATCC 25920 CAIM 519T     
Function   promote HapR production (predicted from homology)   
Competence regulation

Genomic Context

Location: 2275330..2286733
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  A8140_RS10900 (A8140_10345) moaE 2275862..2276317 (-) 456 WP_005531406.1 molybdopterin synthase catalytic subunit MoaE -
  A8140_RS10905 (A8140_10350) moaD 2276319..2276576 (-) 258 WP_005531405.1 molybdopterin synthase sulfur carrier subunit -
  A8140_RS10910 (A8140_10355) moaC 2276576..2277052 (-) 477 WP_005531404.1 cyclic pyranopterin monophosphate synthase MoaC -
  A8140_RS10915 (A8140_10360) moaB 2277079..2277591 (-) 513 WP_005531403.1 molybdenum cofactor biosynthesis protein B -
  A8140_RS10920 (A8140_10365) moaA 2277692..2278681 (-) 990 WP_005531402.1 GTP 3',8-cyclase MoaA -
  A8140_RS10925 (A8140_10370) - 2278979..2279872 (+) 894 WP_005531401.1 YvcK family protein -
  A8140_RS10930 (A8140_10375) luxU 2279989..2280333 (-) 345 WP_005531400.1 quorum-sensing phosphorelay protein LuxU -
  A8140_RS10935 (A8140_10380) luxO 2280330..2281733 (-) 1404 WP_005531399.1 quorum-sensing sigma-54 dependent transcriptional regulator LuxO Regulator
  A8140_RS10940 (A8140_10385) uvrB 2282077..2284107 (-) 2031 WP_005531398.1 excinuclease ABC subunit UvrB -
  A8140_RS10955 (A8140_10395) - 2284918..2285358 (-) 441 WP_005531397.1 hypothetical protein -
  A8140_RS10960 (A8140_10400) - 2285378..2286709 (-) 1332 WP_005531395.1 hypothetical protein -

Sequence

Protein


Download         Length: 467 a.a.        Molecular weight: 52163.72 Da        Isoelectric Point: 6.0746

>NTDB_id=182590 A8140_RS10935 WP_005531399.1 2280330..2281733(-) (luxO) [Vibrio campbellii CAIM 519 = NBRC 15631 = ATCC 25920 strain ATCC 25920 CAIM 519T]
MQQITEGQKSRYLLMVEDTASVAALYRSYLTPLGIDINIVGTGRDAIESLNHRIPDLILLDLRLPDMTGMDVLHAVKKSH
PDVPIIFMKAHGSIDTAVEAMRHGSQDFLIKPCEADRLRVTVNNAIRKATKLKNEADNPGNQNYQGFIGSSQTMQQVYRT
IDSAASSKASIFITGESGTGKEVCAEAIHAASKRGDKPFIAINCAAIPKDLIESELFGHVKGAFTGAANDRQGAAELADG
GTLFLDELCEMDLDLQTKLLRFIQTGTFQKVGSSKMKSVDVRFVCATNRDPWKEVQEGRFREDLYYRLYVIPLHLPPLRE
RGEDVIEIAYSLLGYMSHEEGKSFVRFAQDVIERFNSYEWPGNVRQLQNVLRNIVVLNNGKEITLDMLPPPLNQPVVRQS
VAKFIEPDIMTVSDIMPLWMTEKMAIEQAIQACEGNIPRAAGYLDVSPSTIYRKLQAWNSKDEKQNV

Nucleotide


Download         Length: 1404 bp        

>NTDB_id=182590 A8140_RS10935 WP_005531399.1 2280330..2281733(-) (luxO) [Vibrio campbellii CAIM 519 = NBRC 15631 = ATCC 25920 strain ATCC 25920 CAIM 519T]
ATGCAACAAATAACAGAAGGTCAAAAGTCTCGTTATCTACTAATGGTAGAAGACACCGCATCCGTTGCGGCACTTTACCG
TTCTTACCTCACGCCACTTGGCATCGATATCAATATTGTTGGAACAGGCAGAGACGCCATTGAAAGCCTGAACCATCGCA
TTCCTGATCTTATTCTGCTCGATCTTCGTCTACCTGATATGACGGGGATGGACGTATTGCACGCGGTGAAGAAAAGCCAT
CCAGACGTGCCAATCATCTTCATGAAAGCCCATGGCTCTATCGATACTGCGGTAGAGGCGATGCGTCACGGTTCTCAAGA
CTTCCTAATCAAACCATGTGAAGCAGACCGTTTACGTGTCACGGTGAATAATGCGATCCGCAAAGCAACCAAATTAAAGA
ATGAAGCTGACAACCCTGGTAACCAAAATTACCAAGGCTTCATCGGCAGTAGCCAAACGATGCAGCAGGTTTACCGTACC
ATTGACTCGGCAGCAAGCAGTAAAGCGAGTATTTTCATCACGGGTGAAAGTGGTACGGGTAAAGAAGTGTGTGCCGAAGC
GATTCACGCAGCAAGCAAACGTGGTGATAAGCCGTTTATCGCCATCAACTGTGCGGCAATCCCGAAAGACCTTATTGAAA
GTGAGCTGTTTGGTCACGTAAAAGGTGCGTTTACTGGTGCTGCGAATGACCGACAAGGTGCGGCAGAGCTTGCTGATGGC
GGCACGTTGTTCCTTGATGAGCTCTGTGAAATGGACTTGGATCTTCAAACTAAGCTATTGCGCTTTATCCAAACGGGTAC
ATTCCAAAAAGTCGGTTCTTCTAAAATGAAGAGCGTGGATGTACGCTTTGTGTGTGCAACTAACCGAGACCCTTGGAAAG
AAGTGCAAGAAGGCCGTTTCCGTGAAGACTTGTATTACCGTTTGTACGTGATTCCTTTGCACCTTCCGCCGCTGCGTGAG
CGTGGTGAAGATGTTATTGAAATTGCATACTCGCTGCTTGGTTATATGTCTCATGAGGAAGGCAAGAGTTTCGTCCGTTT
CGCACAAGACGTGATTGAAAGATTCAACAGCTACGAATGGCCGGGTAACGTTCGCCAATTGCAAAACGTATTACGTAATA
TCGTGGTACTGAACAATGGCAAAGAGATCACGCTGGATATGTTACCGCCACCACTGAATCAGCCTGTTGTGCGCCAATCG
GTAGCAAAATTTATTGAACCTGACATTATGACGGTGTCAGATATTATGCCGCTTTGGATGACAGAGAAAATGGCCATCGA
GCAGGCAATTCAAGCGTGTGAAGGCAACATTCCACGCGCTGCTGGCTATTTGGATGTTAGCCCATCAACGATTTATCGCA
AGTTGCAAGCTTGGAATAGCAAGGACGAAAAACAAAACGTATGA

Domains

Predicted by InterproScan.

Response regulator receiver domain (Response_reg)

(14-122)

Bacterial regulatory protein, Fis family (HTH_8)

(418-458)

Sigma-54 interaction domain (Sigma54_activat)

(148-313)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  luxO Vibrio cholerae strain A1552

86.161

95.931

0.827

Multiple sequence alignment