Detailed information    

insolico Bioinformatically predicted

Overview

Name   sbcB   Type   Machinery gene
Locus tag   A8140_RS07270 Genome accession   NZ_CP015863
Coordinates   1541795..1543216 (-) Length   473 a.a.
NCBI ID   WP_005528196.1    Uniprot ID   A7MVI1
Organism   Vibrio campbellii CAIM 519 = NBRC 15631 = ATCC 25920 strain ATCC 25920 CAIM 519T     
Function   promote homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1536795..1548216
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  A8140_RS07245 (A8140_06995) purT 1537385..1538560 (-) 1176 WP_005533409.1 formate-dependent phosphoribosylglycinamide formyltransferase -
  A8140_RS07250 (A8140_07000) - 1538769..1539467 (+) 699 WP_005533408.1 hypothetical protein -
  A8140_RS07255 (A8140_07005) cdd 1539531..1540418 (-) 888 WP_005427951.1 cytidine deaminase -
  A8140_RS07260 (A8140_07010) - 1540683..1541360 (-) 678 WP_005528192.1 LrgB family protein -
  A8140_RS07265 (A8140_07015) - 1541362..1541736 (-) 375 WP_012127845.1 CidA/LrgA family protein -
  A8140_RS07270 (A8140_07020) sbcB 1541795..1543216 (-) 1422 WP_005528196.1 exodeoxyribonuclease I Machinery gene
  A8140_RS07275 (A8140_07025) - 1543378..1544058 (-) 681 WP_005528198.1 DUF1826 domain-containing protein -
  A8140_RS07280 (A8140_07030) - 1544286..1545659 (-) 1374 WP_005528200.1 L-cystine transporter -
  A8140_RS07285 (A8140_07035) - 1545853..1546548 (-) 696 WP_005528201.1 NAD(P)H-binding protein -
  A8140_RS07290 (A8140_07040) - 1547204..1547815 (+) 612 WP_032999832.1 flavin reductase family protein -

Sequence

Protein


Download         Length: 473 a.a.        Molecular weight: 54483.76 Da        Isoelectric Point: 4.9244

>NTDB_id=182588 A8140_RS07270 WP_005528196.1 1541795..1543216(-) (sbcB) [Vibrio campbellii CAIM 519 = NBRC 15631 = ATCC 25920 strain ATCC 25920 CAIM 519T]
MHQDNQPTFFFFDYETWGTSPAKDRPSQFAGVRTDENFNIIGEPLVMYCRPPADYLPSPDAALITGITPQKAMQEGLPEP
EFIAKIHAELSKPNTTSLGYNSIRFDDEVTRYTCYRNFIDPYAWSWQNGNSRWDLLDVMRACHALRPEGVEWPENDEGFT
SFKLEHLSVANGIEHSNAHDAMADVVATIEMAKKVKAAQPKLFDYFFSMRNKRKLNELVDIVNMTPLMHVSGMLGRECQY
TSWIVPVAWHPTNNNAVITIDLAKDPQPILELSAEELKERLYTKRDELGDLLPVPVKLVHLNKCPILAPAKTLTAENAEV
IGIDRQKCLSNLALLRQHPEIREKLISLFSIEREFEKSDDVDTQLYDGFFSPADRAAMDIIRETDPNNLAALDIEFDDKR
IKPLLFRYRARHYAGTLDEQEQRRWAQHCREVFESQIEEYMLNLENLVHEHESDEKKIAILKSVYRYVESLAS

Nucleotide


Download         Length: 1422 bp        

>NTDB_id=182588 A8140_RS07270 WP_005528196.1 1541795..1543216(-) (sbcB) [Vibrio campbellii CAIM 519 = NBRC 15631 = ATCC 25920 strain ATCC 25920 CAIM 519T]
ATGCACCAAGATAATCAGCCCACTTTTTTCTTTTTTGATTACGAGACTTGGGGAACAAGTCCAGCCAAAGATCGTCCAAG
CCAATTCGCTGGCGTTCGTACTGATGAAAACTTCAATATCATTGGTGAACCTTTGGTCATGTACTGTCGTCCGCCCGCTG
ATTACCTTCCTTCACCAGACGCCGCTTTAATCACTGGTATTACGCCACAAAAAGCGATGCAAGAAGGCCTACCTGAACCT
GAATTTATCGCTAAGATCCACGCAGAGCTTTCTAAGCCAAATACCACTAGTCTTGGCTACAACAGTATTCGCTTCGATGA
CGAAGTCACACGTTACACCTGTTACCGCAACTTTATCGATCCTTATGCGTGGAGCTGGCAAAACGGTAACTCACGCTGGG
ATTTACTCGATGTAATGCGTGCGTGTCATGCTCTTCGCCCAGAGGGCGTAGAATGGCCAGAAAATGATGAAGGCTTTACA
AGTTTCAAACTTGAGCATTTATCCGTAGCAAATGGTATTGAACACAGCAATGCCCACGATGCGATGGCAGACGTGGTTGC
AACGATTGAGATGGCGAAGAAAGTGAAGGCCGCTCAACCAAAACTGTTTGATTACTTTTTCTCGATGCGTAACAAACGCA
AACTGAACGAGTTAGTCGATATTGTTAACATGACGCCGTTGATGCACGTGTCGGGCATGTTGGGACGCGAATGCCAATAC
ACCAGTTGGATTGTGCCTGTGGCTTGGCACCCAACCAACAATAACGCTGTCATTACGATTGACTTGGCGAAGGATCCTCA
GCCGATCTTAGAACTTTCAGCAGAAGAGTTGAAAGAACGTTTGTACACCAAGCGTGACGAATTGGGTGACCTGCTGCCTG
TACCCGTTAAGCTCGTGCACCTGAACAAGTGCCCTATCCTCGCGCCTGCTAAGACCCTGACTGCGGAAAATGCGGAAGTT
ATTGGTATCGATCGTCAGAAATGTTTAAGCAATTTAGCTTTGTTACGCCAACACCCAGAAATCCGCGAAAAACTAATTAG
TCTATTCTCTATTGAGCGTGAATTCGAAAAGAGCGACGACGTGGATACACAGCTTTATGACGGCTTCTTCTCACCAGCTG
ACCGCGCGGCGATGGACATCATTCGTGAAACGGATCCGAATAATCTGGCTGCGCTGGATATTGAGTTTGATGACAAACGT
ATCAAGCCGTTGTTATTCCGTTACCGTGCTCGTCACTATGCTGGCACCTTGGATGAACAAGAACAAAGACGCTGGGCACA
ACATTGTCGCGAAGTGTTCGAAAGCCAGATTGAAGAGTACATGCTGAACTTAGAAAACTTAGTTCACGAACATGAAAGTG
ACGAAAAGAAGATAGCAATACTAAAATCTGTCTATCGTTATGTAGAGAGCTTAGCCTCCTAA

Domains

Predicted by InterproScan.

Exonuclease (RNase_T)

(11-190)

Exonuclease C-terminal (Exonuc_X-T_C)

(210-469)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A7MVI1

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sbcB Vibrio cholerae O1 biovar El Tor strain E7946

79.07

100

0.791

Multiple sequence alignment