Detailed information    

insolico Bioinformatically predicted

Overview

Name   radC   Type   Machinery gene
Locus tag   B2J87_RS09545 Genome accession   NZ_CP019961
Coordinates   1859346..1860014 (+) Length   222 a.a.
NCBI ID   WP_001297375.1    Uniprot ID   P65957
Organism   Escherichia coli strain HKUOPY1     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1854346..1865014
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  B2J87_RS09510 (B2J87_09610) yicC 1854365..1855228 (-) 864 WP_000621336.1 YicC/YloC family endoribonuclease -
  B2J87_RS09520 (B2J87_09620) rph 1855355..1856071 (+) 717 WP_001247089.1 ribonuclease PH -
  B2J87_RS09525 (B2J87_09625) pyrE 1856137..1856778 (+) 642 WP_000806177.1 orotate phosphoribosyltransferase -
  B2J87_RS09530 (B2J87_09630) slmA 1856815..1857411 (-) 597 WP_000818601.1 nucleoid occlusion factor SlmA -
  B2J87_RS09535 (B2J87_09635) dut 1857518..1857976 (-) 459 WP_000976070.1 dUTP diphosphatase -
  B2J87_RS09540 (B2J87_09640) coaBC 1857954..1859174 (-) 1221 WP_000050139.1 bifunctional phosphopantothenoylcysteine decarboxylase/phosphopantothenate--cysteine ligase CoaBC -
  B2J87_RS09545 (B2J87_09645) radC 1859346..1860014 (+) 669 WP_001297375.1 DNA repair protein RadC Machinery gene
  B2J87_RS09550 (B2J87_09650) rpmB 1860231..1860467 (+) 237 WP_000091955.1 50S ribosomal protein L28 -
  B2J87_RS09555 (B2J87_09655) rpmG 1860488..1860655 (+) 168 WP_001051798.1 50S ribosomal protein L33 -
  B2J87_RS09560 (B2J87_09660) mutM 1860753..1861562 (+) 810 WP_001114533.1 bifunctional DNA-formamidopyrimidine glycosylase/DNA-(apurinic or apyrimidinic site) lyase -
  B2J87_RS09565 (B2J87_09665) coaD 1861601..1862080 (-) 480 WP_001171873.1 pantetheine-phosphate adenylyltransferase -
  B2J87_RS09570 (B2J87_09670) waaA 1862088..1863365 (-) 1278 WP_000891562.1 lipid IV(A) 3-deoxy-D-manno-octulosonic acid transferase -
  B2J87_RS09575 (B2J87_09675) rfaQ 1863778..1864836 (+) 1059 WP_000360402.1 lipopolysaccharide core heptosyltransferase RfaQ -

Sequence

Protein


Download         Length: 222 a.a.        Molecular weight: 25258.35 Da        Isoelectric Point: 7.9748

>NTDB_id=182587 B2J87_RS09545 WP_001297375.1 1859346..1860014(+) (radC) [Escherichia coli strain HKUOPY1]
MKNNAQLLMPREKMLKFGISALTDVELLALFLRTGTRGKDVLTLAKEMLENFGSLYGLLTSEYEQFSGVHGIGVAKFAQL
KGIAELARRYYNVRMREESPLLSPEMTREFLQSQLTGEEREIFMVIFLDSQHRVITHSRLFSGTLNHVEVHPREIIREAI
KINASALILAHNHPSGCAEPSKADKLITERIIKSCQFMDLRVLDHIVIGRGEYVSFAERGWI

Nucleotide


Download         Length: 669 bp        

>NTDB_id=182587 B2J87_RS09545 WP_001297375.1 1859346..1860014(+) (radC) [Escherichia coli strain HKUOPY1]
GTGAAAAACAATGCACAGCTGTTGATGCCGCGCGAAAAAATGCTGAAGTTTGGTATTAGCGCCTTAACGGATGTCGAGCT
GCTGGCGTTATTTCTGCGTACCGGAACGCGCGGTAAAGATGTATTAACCCTGGCAAAAGAGATGCTGGAGAATTTCGGCT
CTCTTTATGGCTTGTTAACCTCTGAATATGAACAATTTAGTGGCGTTCATGGAATTGGCGTAGCGAAATTTGCCCAGTTA
AAGGGGATTGCTGAACTGGCGCGGCGTTACTACAACGTGCGGATGCGTGAAGAAAGCCCTTTACTCAGCCCGGAGATGAC
GCGGGAATTTTTACAAAGCCAGCTCACGGGTGAGGAGCGGGAGATCTTTATGGTGATCTTTCTCGACTCACAACACCGGG
TTATAACGCATAGCCGTCTTTTTTCCGGCACGCTAAACCATGTTGAAGTCCATCCTCGGGAAATTATCCGCGAAGCGATA
AAAATAAACGCCTCGGCGCTGATCCTTGCACATAATCACCCTTCGGGTTGTGCTGAACCCAGTAAAGCGGATAAACTCAT
TACTGAACGGATAATAAAGAGTTGTCAGTTCATGGATTTACGCGTGCTCGACCATATCGTGATTGGGCGTGGAGAGTATG
TTTCTTTTGCCGAACGCGGCTGGATTTAA

Domains

Predicted by InterProScan.

RadC-like JAB domain (RadC)

(103-220)

UPF0758 N-terminal (UPF0758_N)

(9-77)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB P65957

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radC Haemophilus influenzae Rd KW20

49.55

100

0.496

Multiple sequence alignment