Detailed information    

insolico Bioinformatically predicted

Overview

Name   pepF   Type   Regulator
Locus tag   A8704_RS02555 Genome accession   NZ_CP015857
Coordinates   499002..500813 (+) Length   603 a.a.
NCBI ID   WP_064578132.1    Uniprot ID   -
Organism   Lactiplantibacillus plantarum strain LZ227     
Function   degradation of XIP; competence shut-off (predicted from homology)   
Competence regulation

Genomic Context

Location: 494002..505813
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  A8704_RS02530 (A8704_02530) - 494718..495218 (-) 501 WP_003640886.1 antibiotic biosynthesis monooxygenase -
  A8704_RS02535 (A8704_02535) - 495359..496102 (+) 744 WP_064578129.1 MBL fold metallo-hydrolase -
  A8704_RS02540 (A8704_02540) spxA 496389..496787 (+) 399 WP_011101690.1 transcriptional regulator SpxA -
  A8704_RS02545 (A8704_02545) - 496923..497654 (+) 732 WP_064578130.1 adaptor protein MecA -
  A8704_RS02550 (A8704_02550) - 497839..498924 (+) 1086 WP_064578131.1 competence protein CoiA -
  A8704_RS02555 (A8704_02555) pepF 499002..500813 (+) 1812 WP_064578132.1 oligoendopeptidase F Regulator
  A8704_RS02560 (A8704_02560) - 501028..501663 (-) 636 WP_003640880.1 DsbA family protein -
  A8704_RS02565 (A8704_02565) - 501956..502618 (+) 663 WP_003640879.1 GTP pyrophosphokinase -
  A8704_RS02570 (A8704_02570) - 502615..503418 (+) 804 WP_003640878.1 NAD kinase -
  A8704_RS02575 (A8704_02575) - 503415..504317 (+) 903 WP_015380548.1 RluA family pseudouridine synthase -
  A8704_RS02580 (A8704_02580) - 504571..505209 (-) 639 WP_003645947.1 copper homeostasis protein CutC -

Sequence

Protein


Download         Length: 603 a.a.        Molecular weight: 67774.90 Da        Isoelectric Point: 4.8797

>NTDB_id=182546 A8704_RS02555 WP_064578132.1 499002..500813(+) (pepF) [Lactiplantibacillus plantarum strain LZ227]
MVVIKQLPTRSAVPEELTWDLTPIYADQAAYEADIAQVKAAIPTVTALKETFTSSADTVLAGIQAVLALYRRLEKVAVYA
SLKSDQDTGNSTNAALDDQASSLTAKVSAATAWFEPAILELTPGQLDTYLDENVDLRDYRHLLDTIRLQKGHVLSESEEA
LLAGASDIFGASAKTFGVLNNADFQFPTVKDDDGNPVKLSQGIYGVLLESVHPAVRREAFEALYKVYGQFRRTLVSTLAS
QVKVHNFVAQAHHYPDARTAALAANQIPTAVYDSLVTSVDKHLDLLHRYVALRKQLLGVDQLHMYDMYTPLAPKPTTNYS
YQQAQATALQALKILGPDYLKHVKTAFASRWIDVVENQGKRSGAYSSGMYDTAPYMLLNWQDNIDNLYTLVHEMGHSMHS
YFTTHHQPYQYGDYSIFVAEIASTTNENLLTNYFLATEQDPKMRAYVLNYYLDGFKGTVFRQTQFAEFEQWLHEQDQEGQ
ALTADRLSKHYLQLNQRYYGDAVVSDPQIADEWSRIPHFYYNYYVYQYATGFAAASTLADRISTQQTDAVADYLGYLKAG
SSAFPIDVMHRAGVDMTKPDYLDAAFEVFEERLNEFEQLVTQD

Nucleotide


Download         Length: 1812 bp        

>NTDB_id=182546 A8704_RS02555 WP_064578132.1 499002..500813(+) (pepF) [Lactiplantibacillus plantarum strain LZ227]
ATGGTAGTGATCAAACAATTGCCGACCCGTTCGGCCGTTCCTGAAGAACTGACGTGGGATTTGACGCCCATTTATGCAGA
TCAGGCCGCGTATGAGGCGGATATTGCACAAGTCAAAGCTGCAATCCCCACCGTCACTGCGCTTAAAGAAACGTTTACAA
GCTCGGCCGACACGGTGCTGGCTGGCATCCAGGCTGTTTTAGCGCTGTATCGTCGGTTAGAGAAAGTGGCGGTATACGCA
AGTCTGAAAAGTGACCAGGATACTGGCAATAGTACCAATGCGGCTTTAGACGATCAAGCTAGTAGTTTGACTGCCAAGGT
ATCCGCAGCGACTGCCTGGTTCGAACCAGCAATCTTGGAATTAACGCCGGGCCAATTGGATACGTACCTTGATGAAAACG
TCGATTTACGTGATTATCGGCATTTGTTGGATACGATCCGGTTGCAAAAGGGACACGTTCTGTCTGAAAGCGAAGAAGCT
TTACTCGCAGGCGCTAGTGATATTTTTGGTGCTTCTGCGAAAACTTTTGGTGTACTGAATAACGCTGACTTTCAATTTCC
AACGGTAAAGGATGACGACGGCAACCCTGTCAAATTGTCACAAGGAATTTATGGGGTGTTACTTGAGTCCGTTCATCCGG
CTGTTCGGCGAGAGGCGTTTGAAGCACTGTATAAAGTATACGGCCAGTTCCGGCGAACACTTGTTTCGACTTTAGCTAGC
CAAGTCAAGGTACACAATTTTGTTGCCCAGGCTCATCATTATCCAGATGCGCGGACGGCAGCACTTGCTGCCAATCAGAT
TCCGACGGCGGTTTACGATTCTTTAGTCACGTCCGTTGACAAGCATTTGGACTTATTGCACCGGTATGTTGCGTTACGGA
AACAACTGCTCGGAGTTGATCAGTTGCATATGTATGATATGTACACGCCATTGGCACCCAAGCCGACGACCAACTATTCC
TACCAGCAGGCTCAAGCAACTGCTTTACAAGCGCTCAAAATTTTGGGTCCTGATTATCTCAAACACGTCAAAACAGCGTT
TGCTTCACGGTGGATTGATGTGGTGGAAAATCAAGGCAAACGTAGCGGGGCGTATTCGTCAGGAATGTATGATACCGCGC
CATACATGCTGTTGAACTGGCAGGATAATATTGATAATTTATATACGTTGGTGCACGAAATGGGACACAGTATGCACTCT
TACTTCACGACACATCATCAGCCTTATCAGTATGGTGACTATTCAATTTTCGTGGCGGAAATTGCATCAACGACTAATGA
AAACTTGTTGACGAACTATTTCTTAGCGACTGAACAAGATCCAAAAATGCGGGCGTATGTCTTGAATTACTACTTAGATG
GATTTAAAGGCACCGTTTTCCGGCAGACGCAATTTGCTGAGTTTGAACAGTGGCTTCATGAGCAAGATCAAGAAGGTCAG
GCTTTGACTGCCGATCGCTTGTCAAAACATTATTTGCAGTTGAACCAACGCTACTATGGTGACGCCGTCGTCAGTGATCC
GCAAATTGCCGACGAATGGTCCCGTATCCCGCATTTTTATTACAATTATTATGTTTATCAGTATGCCACGGGTTTTGCAG
CGGCCTCAACGTTGGCTGACCGTATTAGTACGCAACAGACAGATGCTGTTGCGGATTATCTCGGTTACTTGAAAGCTGGT
TCATCTGCTTTCCCAATCGATGTCATGCACCGAGCTGGAGTTGATATGACCAAGCCTGATTATCTTGATGCAGCTTTCGA
GGTATTTGAAGAACGATTAAATGAATTTGAACAGTTGGTCACCCAAGATTAA

Domains

Predicted by InterproScan.

Oligopeptidase F (Peptidase_M3_N)

(118-186)

Peptidase family M3 (Peptidase_M3)

(207-587)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pepF Streptococcus salivarius strain HSISS4

51.347

98.507

0.506

Multiple sequence alignment