Detailed information    

insolico Bioinformatically predicted

Overview

Name   radC   Type   Machinery gene
Locus tag   B2H83_RS21080 Genome accession   NZ_CP019953
Coordinates   4239999..4240667 (-) Length   222 a.a.
NCBI ID   WP_001298959.1    Uniprot ID   Q31UY8
Organism   Escherichia coli M8     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 4234999..4245667
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  B2H83_RS21050 (B2H83_22355) rfaQ 4235177..4236235 (-) 1059 WP_000360402.1 lipopolysaccharide core heptosyltransferase RfaQ -
  B2H83_RS21055 (B2H83_22360) waaA 4236648..4237925 (+) 1278 WP_000891564.1 lipid IV(A) 3-deoxy-D-manno-octulosonic acid transferase -
  B2H83_RS21060 (B2H83_22365) coaD 4237933..4238412 (+) 480 WP_001171866.1 pantetheine-phosphate adenylyltransferase -
  B2H83_RS21065 (B2H83_22370) mutM 4238451..4239260 (-) 810 WP_001114533.1 bifunctional DNA-formamidopyrimidine glycosylase/DNA-(apurinic or apyrimidinic site) lyase -
  B2H83_RS21070 (B2H83_22375) rpmG 4239358..4239525 (-) 168 WP_001051798.1 50S ribosomal protein L33 -
  B2H83_RS21075 (B2H83_22380) rpmB 4239546..4239782 (-) 237 WP_000091955.1 50S ribosomal protein L28 -
  B2H83_RS21080 (B2H83_22385) radC 4239999..4240667 (-) 669 WP_001298959.1 DNA repair protein RadC Machinery gene
  B2H83_RS21085 (B2H83_22390) coaBC 4240839..4242059 (+) 1221 WP_129542036.1 bifunctional phosphopantothenoylcysteine decarboxylase/phosphopantothenate--cysteine ligase CoaBC -
  B2H83_RS21090 (B2H83_22395) dut 4242037..4242495 (+) 459 WP_000976070.1 dUTP diphosphatase -
  B2H83_RS21095 (B2H83_22400) slmA 4242602..4243198 (+) 597 WP_000818601.1 nucleoid occlusion factor SlmA -
  B2H83_RS21100 (B2H83_22405) pyrE 4243235..4243876 (-) 642 WP_000806161.1 orotate phosphoribosyltransferase -
  B2H83_RS21105 (B2H83_22410) rph 4243942..4244658 (-) 717 WP_001247093.1 ribonuclease PH -
  B2H83_RS21110 (B2H83_22420) yicC 4244785..4245648 (+) 864 WP_000621336.1 YicC/YloC family endoribonuclease -

Sequence

Protein


Download         Length: 222 a.a.        Molecular weight: 25274.35 Da        Isoelectric Point: 7.9748

>NTDB_id=182530 B2H83_RS21080 WP_001298959.1 4239999..4240667(-) (radC) [Escherichia coli M8]
MKNNSQLLMPREKMLKFGISALTDVELLALFLRTGTRGKDVLTLAKEMLENFGSLYGLLTSEYEQFSGVHGIGVAKFAQL
KGIAELARRYYNVRMREESPLLSPEMTREFLQSQLTGEEREIFMVIFLDSQHRVITHSRLFSGTLNHVEVHPREIIREAI
KINASALILAHNHPSGCAEPSKADKLITERIIKSCQFMDLRVLDHIVIGRGEYVSFAERGWI

Nucleotide


Download         Length: 669 bp        

>NTDB_id=182530 B2H83_RS21080 WP_001298959.1 4239999..4240667(-) (radC) [Escherichia coli M8]
GTGAAAAACAATTCACAGCTGTTGATGCCGCGCGAAAAAATGCTGAAGTTTGGTATTAGCGCCTTAACGGATGTCGAGCT
GCTGGCGCTATTTCTGCGTACCGGAACGCGCGGTAAAGATGTATTAACCCTGGCAAAAGAGATGCTGGAGAATTTCGGCT
CTCTTTATGGCTTGTTAACCTCTGAATATGAACAATTTAGTGGCGTTCATGGAATTGGCGTGGCGAAATTTGCCCAGTTA
AAGGGGATTGCTGAACTGGCGCGGCGTTACTACAACGTGCGGATGCGTGAAGAAAGCCCTTTACTCAGCCCGGAGATGAC
GCGGGAATTTTTACAAAGCCAGCTCACGGGTGAGGAGCGGGAGATCTTTATGGTGATCTTTCTCGACTCACAACACCGGG
TTATAACGCATAGCCGACTTTTTTCCGGCACGCTAAACCATGTTGAAGTCCATCCTCGGGAAATTATCCGCGAAGCGATA
AAAATAAACGCCTCGGCGCTGATCCTTGCACATAATCACCCTTCGGGTTGTGCTGAACCCAGTAAAGCGGATAAACTCAT
TACTGAACGGATAATAAAGAGTTGTCAGTTCATGGATTTACGCGTGCTCGACCATATCGTGATTGGGCGTGGAGAGTATG
TTTCTTTTGCCGAACGCGGCTGGATTTAA

Domains

Predicted by InterProScan.

UPF0758 N-terminal (UPF0758_N)

(9-77)

RadC-like JAB domain (RadC)

(103-220)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB Q31UY8

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radC Haemophilus influenzae Rd KW20

49.55

100

0.496