Detailed information    

insolico Bioinformatically predicted

Overview

Name   sxy/tfoX   Type   Regulator
Locus tag   A8714_RS08780 Genome accession   NZ_CP015853
Coordinates   1545615..1546244 (-) Length   209 a.a.
NCBI ID   WP_000839159.1    Uniprot ID   A0AAV3HCB2
Organism   Escherichia coli strain ATCC 43889     
Function   positive regulator of competence gene (predicted from homology)   
Competence regulation

Related MGE

Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.

Gene-MGE association summary

MGE type MGE coordinates Gene coordinates Relative position Distance (bp)
ICE 1534978..1557416 1545615..1546244 within 0


Gene organization within MGE regions


Location: 1534978..1557416
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  A8714_RS08725 (A8714_08580) yccA 1535964..1536623 (+) 660 WP_000375128.1 FtsH protease modulator YccA -
  A8714_RS08730 (A8714_08585) tusE 1536714..1537043 (+) 330 WP_000904442.1 sulfurtransferase TusE -
  A8714_RS08735 (A8714_08590) yccX 1537040..1537318 (-) 279 WP_000048252.1 acylphosphatase -
  A8714_RS08740 (A8714_08595) rlmI 1537413..1538603 (+) 1191 WP_000116288.1 23S rRNA (cytosine(1962)-C(5))-methyltransferase RlmI -
  A8714_RS08745 (A8714_08600) hspQ 1538661..1538978 (+) 318 WP_001295356.1 heat shock protein HspQ -
  A8714_RS08750 (A8714_08605) yccU 1539023..1539436 (-) 414 WP_000665217.1 CoA-binding protein -
  A8714_RS08755 (A8714_08615) yccT 1539609..1540271 (+) 663 WP_000847791.1 DUF2057 family protein -
  A8714_RS08760 (A8714_08620) mgsA 1540367..1540825 (+) 459 WP_000424181.1 methylglyoxal synthase -
  A8714_RS08765 (A8714_08625) helD 1540857..1542911 (-) 2055 WP_001301436.1 DNA helicase IV -
  A8714_RS08770 (A8714_08630) yccF 1543034..1543480 (+) 447 WP_001261230.1 YccF domain-containing protein -
  A8714_RS08775 (A8714_08635) yccS 1543490..1545652 (+) 2163 WP_000875023.1 YccS family putative transporter -
  A8714_RS08780 (A8714_08640) sxy/tfoX 1545615..1546244 (-) 630 WP_000839159.1 CRP-S regulon transcriptional coactivator Sxy Regulator
  A8714_RS08785 (A8714_08645) sulA 1546463..1546972 (+) 510 WP_000288710.1 SOS-induced cell division inhibitor SulA -
  A8714_RS08790 (A8714_08655) ompA 1547329..1548369 (+) 1041 WP_000750416.1 porin OmpA -
  A8714_RS08795 (A8714_08660) matP 1548444..1548896 (-) 453 WP_000877161.1 macrodomain Ter protein MatP -
  A8714_RS08800 (A8714_08665) ycbZ 1549082..1550842 (+) 1761 WP_000156526.1 Lon protease family protein -
  A8714_RS08805 (A8714_08670) fabA 1550911..1551429 (+) 519 WP_000227927.1 bifunctional 3-hydroxydecanoyl-ACP dehydratase/trans-2-decenoyl-ACP isomerase -
  A8714_RS08810 (A8714_08675) rmf 1551499..1551666 (-) 168 WP_000828648.1 ribosome modulation factor -
  A8714_RS08815 (A8714_08680) pqiC 1551922..1552485 (-) 564 WP_000759107.1 membrane integrity-associated transporter subunit PqiC -
  A8714_RS08820 (A8714_08685) pqiB 1552482..1554122 (-) 1641 WP_000445550.1 intermembrane transport protein PqiB -
  A8714_RS08825 (A8714_08690) pqiA 1554127..1555379 (-) 1253 Protein_1679 membrane integrity-associated transporter subunit PqiA -
  A8714_RS08830 (A8714_08695) uup 1555509..1557416 (-) 1908 WP_000053083.1 ABC transporter ATP-binding protein -

Sequence

Protein


Download         Length: 209 a.a.        Molecular weight: 24173.05 Da        Isoelectric Point: 9.1942

>NTDB_id=182521 A8714_RS08780 WP_000839159.1 1545615..1546244(-) (sxy/tfoX) [Escherichia coli strain ATCC 43889]
MKSLSYKRIYKSQEYLATLGTIEYRSLFGSYSLTVDDTVFAMVSDGELYLRACEQSAQYCVKYPPVWLTYKKCGRSVTLN
YYRVDESLWRNQLKLVRLSKYSLDAALKEKSTRNTRERLKDLPNMSFHLEAILGEVGIKDVRALRILGAKMCWLRLRQQN
SLVTEKILFMLEGAIIGIHEAALPVARRQELAEWADSLTPKQEFPAELE

Nucleotide


Download         Length: 630 bp        

>NTDB_id=182521 A8714_RS08780 WP_000839159.1 1545615..1546244(-) (sxy/tfoX) [Escherichia coli strain ATCC 43889]
ATGAAAAGCCTCTCCTATAAGCGGATCTATAAATCACAAGAATACCTGGCAACGTTGGGCACAATTGAATACCGATCATT
GTTTGGCAGTTACAGCCTGACCGTTGACGACACGGTGTTTGCGATGGTTTCTGATGGTGAGTTGTATCTTCGGGCTTGTG
AGCAAAGTGCACAGTACTGTGTAAAATATCCGCCTGTCTGGCTGACATATAAAAAGTGTGGCCGATCCGTTACCCTCAAT
TACTATCGGGTTGATGAAAGTCTATGGCGAAATCAACTGAAGCTGGTGCGTCTGTCGAAATATTCTCTCGATGCAGCGCT
GAAAGAGAAAAGCACGCGCAATACCCGGGAAAGACTGAAAGATTTGCCCAATATGTCTTTTCATCTGGAAGCGATTCTCG
GGGAGGTGGGGATTAAGGATGTACGGGCGTTACGTATACTCGGGGCAAAAATGTGTTGGTTGCGACTGCGGCAGCAAAAC
AGTCTGGTGACAGAAAAGATTCTGTTTATGCTTGAAGGTGCCATTATCGGCATTCATGAAGCTGCGCTCCCGGTGGCACG
CCGCCAGGAGCTTGCAGAATGGGCTGACTCTCTTACGCCGAAACAGGAGTTTCCTGCGGAACTTGAGTAA

Domains

Predicted by InterproScan.

TfoX N-terminal domain (TfoX_N)

(14-106)

TfoX C-terminal domain (TfoX_C)

(116-194)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sxy/tfoX Escherichia coli BW25113 strain K-12

99.522

100

0.995

Multiple sequence alignment