Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA   Type   Machinery gene
Locus tag   A8L59_RS22755 Genome accession   NZ_CP015852
Coordinates   5085552..5086919 (-) Length   455 a.a.
NCBI ID   WP_003228407.1    Uniprot ID   A0A031FPN1
Organism   Pseudomonas koreensis strain CRS05-R5     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 5080552..5091919
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  A8L59_RS22730 (A8L59_22710) - 5080683..5081393 (+) 711 WP_064589273.1 GntR family transcriptional regulator -
  A8L59_RS22735 (A8L59_22715) yjiA 5081492..5082463 (-) 972 WP_064589274.1 GTPase -
  A8L59_RS22740 (A8L59_22720) - 5082626..5082823 (-) 198 WP_003228401.1 YbdD/YjiX family protein -
  A8L59_RS22745 (A8L59_22725) - 5082839..5084905 (-) 2067 WP_064589275.1 carbon starvation CstA family protein -
  A8L59_RS22750 (A8L59_22730) - 5085065..5085433 (+) 369 WP_064589276.1 PilZ domain-containing protein -
  A8L59_RS22755 (A8L59_22735) radA 5085552..5086919 (-) 1368 WP_003228407.1 DNA repair protein RadA Machinery gene
  A8L59_RS22760 (A8L59_22740) - 5086963..5087499 (-) 537 WP_064589277.1 ankyrin repeat domain-containing protein -
  A8L59_RS22765 (A8L59_22745) katB 5087558..5089099 (-) 1542 WP_064589278.1 catalase KatB -
  A8L59_RS22770 (A8L59_22750) mscL 5089386..5089799 (+) 414 WP_064589280.1 large-conductance mechanosensitive channel protein MscL -
  A8L59_RS22775 (A8L59_22755) - 5089842..5090618 (-) 777 WP_064589281.1 ferredoxin--NADP reductase -
  A8L59_RS22780 (A8L59_22760) - 5090932..5091660 (+) 729 WP_064589283.1 autoinducer binding domain-containing protein -

Sequence

Protein


Download         Length: 455 a.a.        Molecular weight: 48731.21 Da        Isoelectric Point: 6.8987

>NTDB_id=182510 A8L59_RS22755 WP_003228407.1 5085552..5086919(-) (radA) [Pseudomonas koreensis strain CRS05-R5]
MAKAKRMYGCTECGATFPKWAGQCGECGAWNTLTETMIESGGATAPTGRTGWAGQQAQIKTLAEVSIEEIPRFSTASGEL
DRVLGGGLVDGSVVLIGGDPGIGKSTILLQTLCNLAKSMPALYVTGEESQQQVAMRARRLGLPQDQLRVMTETCIETIIA
TARQEKPKVMVIDSIQTIFTEQLQSAPGGVSQVRESAALLVRYAKQSGTAIFLVGHVTKEGALAGPRVLEHMVDTVLYFE
GESDGRLRLLRAVKNRFGAVNELGVFGMTDKGLKEVSNPSAIFLTRAQEEVPGSVVMATWEGTRPMLVEVQALVDDSHLA
NPRRVTLGLDQNRLAMLLAVLHRHGGIPTHDQDVFLNVVGGVKVLETASDLALMAAVMSSLRNRPLPHDLLVFGEVGLSG
EVRPVPSGQERLKEAAKHGFKRAIVPKGNAPKEAPAGLQIIAVTRLEQALDALFE

Nucleotide


Download         Length: 1368 bp        

>NTDB_id=182510 A8L59_RS22755 WP_003228407.1 5085552..5086919(-) (radA) [Pseudomonas koreensis strain CRS05-R5]
ATGGCCAAGGCCAAGCGCATGTACGGCTGCACCGAGTGCGGCGCAACCTTTCCCAAGTGGGCGGGCCAGTGCGGCGAGTG
CGGCGCCTGGAACACCCTGACCGAAACCATGATCGAAAGCGGCGGTGCCACGGCGCCCACCGGGCGTACCGGCTGGGCCG
GGCAGCAAGCGCAGATCAAGACCCTGGCCGAAGTCAGCATCGAAGAGATCCCGCGCTTCTCCACCGCGTCCGGTGAGCTG
GATCGGGTGCTCGGTGGTGGGCTGGTCGACGGTTCGGTGGTGCTGATCGGCGGTGACCCGGGCATCGGCAAGTCGACGAT
CCTGCTGCAGACCCTGTGCAACCTCGCCAAGAGCATGCCGGCGCTGTACGTCACCGGCGAAGAATCACAGCAGCAAGTCG
CCATGCGCGCCCGCCGCCTGGGGCTGCCACAGGATCAACTGCGGGTGATGACCGAAACCTGTATCGAAACCATCATCGCC
ACCGCCCGCCAGGAAAAACCCAAGGTGATGGTGATCGACTCGATCCAGACCATCTTCACCGAACAATTGCAGTCAGCCCC
CGGTGGCGTCTCGCAGGTGCGCGAGAGTGCGGCGCTGCTGGTGCGCTATGCCAAGCAGAGCGGTACGGCGATTTTCCTCG
TCGGCCACGTCACCAAGGAGGGCGCGCTCGCCGGCCCGCGCGTTCTGGAACACATGGTCGATACCGTGCTGTATTTCGAA
GGCGAGTCCGATGGCCGTCTGCGGTTGTTGCGTGCAGTGAAAAACCGTTTCGGCGCGGTCAACGAACTCGGCGTGTTCGG
CATGACCGACAAGGGTTTGAAAGAAGTCTCCAACCCTTCGGCGATTTTTCTGACTCGCGCTCAGGAAGAAGTCCCGGGCA
GTGTGGTTATGGCGACGTGGGAAGGCACCCGGCCGATGCTGGTGGAAGTGCAGGCGTTGGTCGATGACAGCCATCTGGCC
AACCCGCGTCGCGTAACACTGGGTCTGGATCAGAACCGCTTGGCAATGTTGCTGGCGGTGCTGCATCGCCATGGCGGCAT
TCCGACTCACGATCAGGATGTGTTCCTCAACGTGGTCGGCGGGGTCAAGGTGCTGGAAACCGCGTCCGACCTGGCGTTGA
TGGCGGCGGTGATGTCGAGCCTGCGCAACCGGCCGTTGCCGCACGACCTGTTGGTGTTCGGCGAAGTCGGGCTATCGGGT
GAAGTGCGTCCGGTGCCGAGCGGGCAGGAGCGCTTGAAGGAAGCGGCCAAGCATGGTTTCAAACGCGCGATCGTGCCCAA
GGGCAATGCACCGAAAGAGGCGCCGGCGGGGTTGCAGATCATTGCTGTGACCCGGCTGGAACAGGCCCTCGATGCATTGT
TTGAGTGA

Domains

Predicted by InterproScan.

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(8-35)

AAA domain (AAA_25)

(81-221)

Subunit ChlI of Mg-chelatase (ChlI)

(353-429)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A031FPN1

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA Bacillus subtilis subsp. subtilis str. 168

49.453

100

0.497
  radA Streptococcus pneumoniae Rx1

46.304

100

0.468
  radA Streptococcus pneumoniae D39

46.304

100

0.468
  radA Streptococcus pneumoniae TIGR4

46.304

100

0.468
  radA Streptococcus pneumoniae R6

46.304

100

0.468
  radA Streptococcus mitis NCTC 12261

46.087

100

0.466
  radA Streptococcus mitis SK321

46.272

100

0.464

Multiple sequence alignment