Detailed information NTG0182372

Bioinformatically predicted

Overview

• Name: cytR
• Type: Regulator
• Locus tag: Eco28_RS26375
• Genome accession: NZ_CP019944
• Coordinates: 5154300..5155325 (+)
• Length: 341 a.a.
• NCBI ID: WP_000644904.1
• Uniprot ID: P0ACN8
• Organism: Escherichia coli strain DSM 103246
• Function: promote competence gene expression (predicted from homology) Competence regulation

Genomic Context

Location: 5149300..5160325

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
Eco28_RS26355 (Eco28_05080)	metJ	5150361..5150678 (+)	318	WP_000852812.1	met regulon transcriptional regulator MetJ	-
Eco28_RS26360 (Eco28_05081)	yiiX	5150862..5151470 (+)	609	WP_000877403.1	YiiX family permuted papain-like enzyme	-
Eco28_RS26365 (Eco28_05082)	rpmE	5151531..5151743 (-)	213	WP_000710769.1	50S ribosomal protein L31	-
Eco28_RS26370 (Eco28_05083)	priA	5151946..5154144 (+)	2199	WP_021578174.1	primosomal protein N'	Machinery gene
Eco28_RS26375 (Eco28_05084)	cytR	5154300..5155325 (+)	1026	WP_000644904.1	DNA-binding transcriptional regulator CytR	Regulator
Eco28_RS26380 (Eco28_05085)	ftsN	5155417..5156376 (+)	960	WP_000068837.1	cell division protein FtsN	-
Eco28_RS26385 (Eco28_05086)	hslV	5156469..5156999 (+)	531	WP_000208242.1	ATP-dependent protease subunit HslV	-
Eco28_RS26390 (Eco28_05087)	hslU	5157009..5158340 (+)	1332	WP_001293341.1	HslU--HslV peptidase ATPase subunit	-
Eco28_RS26395 (Eco28_05088)	menA	5158407..5159333 (+)	927	WP_000139496.1	1,4-dihydroxy-2-naphthoate polyprenyltransferase	-
Eco28_RS26400 (Eco28_05089)	rraA	5159426..5159911 (+)	486	WP_000872908.1	ribonuclease E activity regulator RraA	-

Sequence

Protein

• Length: 341 a.a.
• Molecular weight: 37819.78 Da
• Isoelectric Point: 6.3842

>NTDB_id=182372 Eco28_RS26375 WP_000644904.1 5154300..5155325(+) (cytR) [Escherichia coli strain DSM 103246]
MKAKKQETAATMKDVALKAKVSTATVSRALMNPDKVSQATRNRVEKAAREVGYLPQPMGRNVKRNESRTILVIVPDICDP
FFSEIIRGIEVTAANHGYLVLIGDCAHQNQQEKTFIDLIITKQIDGMLLLGSRLPFDASIEEQRNLPPMVMANEFAPELE
LPTVHIDNLTAAFDAVNYLYEQGHKRIGCIAGPEEMPLCHYRLQGYVQALRRCGIMVDPQYIARGDFTFEAGSKAMQQLL
DLPQPPTAVFCHSDVMALGALSQAKRQGLKVPEDLSIIGFDNIDLTQFCDPPLTTIAQPRYEIGREAMLLLLDQMQGQHV
GSGSRLMDCELIIRGSTRALP

Nucleotide

• Length: 1026 bp

>NTDB_id=182372 Eco28_RS26375 WP_000644904.1 5154300..5155325(+) (cytR) [Escherichia coli strain DSM 103246]
GTGAAAGCGAAGAAGCAGGAAACTGCCGCGACCATGAAAGACGTTGCCCTCAAGGCAAAAGTCTCTACAGCGACCGTCTC
CCGAGCATTAATGAATCCCGATAAAGTCTCCCAGGCCACCCGTAATCGGGTTGAAAAAGCGGCCCGGGAAGTGGGTTATT
TACCGCAGCCTATGGGGCGCAACGTCAAGCGTAATGAATCCCGCACCATTCTGGTGATTGTCCCGGATATCTGCGATCCC
TTCTTTAGCGAAATTATTCGCGGTATAGAAGTTACGGCGGCAAATCACGGATATCTGGTGCTGATTGGCGACTGTGCGCA
TCAAAATCAGCAGGAAAAAACCTTTATCGATTTGATCATCACCAAGCAAATTGATGGCATGTTGCTGCTGGGTTCAAGGC
TGCCGTTTGATGCCAGCATTGAGGAACAGCGTAATCTGCCGCCGATGGTGATGGCGAACGAATTTGCACCGGAACTGGAG
CTGCCTACCGTTCATATCGACAATCTGACCGCCGCATTTGATGCAGTAAATTATTTATATGAGCAAGGGCATAAACGGAT
TGGCTGTATAGCCGGTCCCGAAGAGATGCCGCTGTGTCACTACCGCCTGCAAGGTTACGTTCAGGCGCTGCGTCGCTGCG
GCATTATGGTTGATCCGCAATACATCGCCCGTGGCGACTTCACCTTCGAAGCCGGAAGCAAAGCGATGCAGCAGCTGCTT
GATCTTCCACAACCGCCTACTGCTGTCTTCTGCCATAGCGATGTGATGGCGCTCGGCGCACTTTCTCAGGCAAAACGCCA
GGGGCTGAAAGTCCCGGAAGACCTTTCCATAATCGGTTTTGATAACATCGACCTGACGCAATTTTGTGATCCGCCGCTGA
CAACCATCGCGCAGCCGCGTTACGAAATCGGTCGGGAAGCTATGCTGTTATTGCTTGATCAAATGCAGGGGCAACACGTT
GGCAGTGGCTCTCGTTTAATGGACTGCGAACTTATCATCCGGGGATCAACACGCGCGTTACCTTAA

Domains

Predicted by InterProScan.

• Bacterial regulatory proteins, lacI family (LacI) (11-56)

• Periplasmic binding protein-like domain (Peripla_BP_3) (176-337)

3D structure

• AlphaFold DB: P0ACN8

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
cytR	Vibrio parahaemolyticus RIMD 2210633	64.179	98.24	0.63
cytR	Vibrio cholerae C6706	65.443	95.894	0.628