Detailed information    

insolico Bioinformatically predicted

Overview

Name   radC   Type   Machinery gene
Locus tag   Eco28_RS25115 Genome accession   NZ_CP019944
Coordinates   4899492..4899968 (-) Length   158 a.a.
NCBI ID   WP_001186710.1    Uniprot ID   -
Organism   Escherichia coli strain DSM 103246     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 4894492..4904968
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  Eco28_RS25070 (Eco28_04831) cadC 4894566..4896104 (-) 1539 WP_001187177.1 lysine decarboxylation/transport transcriptional activator CadC -
  Eco28_RS29215 - 4896364..4896523 (-) 160 Protein_4677 integrase -
  Eco28_RS25080 (Eco28_04832) - 4896853..4897422 (-) 570 WP_001290247.1 DUF4942 domain-containing protein -
  Eco28_RS25085 (Eco28_04833) - 4897519..4897716 (-) 198 WP_000839281.1 DUF957 domain-containing protein -
  Eco28_RS25090 (Eco28_04834) - 4897728..4898216 (-) 489 WP_000777541.1 DUF5983 family protein -
  Eco28_RS25095 (Eco28_04835) - 4898213..4898587 (-) 375 WP_000854753.1 TA system toxin CbtA family protein -
  Eco28_RS25100 (Eco28_04836) cbeA 4898677..4899045 (-) 369 WP_001278232.1 type IV toxin-antitoxin system cytoskeleton bundling-enhancing antitoxin CbeA -
  Eco28_RS25110 (Eco28_04838) - 4899208..4899429 (-) 222 WP_000692303.1 DUF987 domain-containing protein -
  Eco28_RS25115 (Eco28_04839) radC 4899492..4899968 (-) 477 WP_001186710.1 RadC family protein Machinery gene
  Eco28_RS25120 (Eco28_04840) - 4899980..4900459 (-) 480 WP_000860065.1 antirestriction protein -
  Eco28_RS25125 (Eco28_04841) - 4900541..4901359 (-) 819 WP_080030379.1 DUF932 domain-containing protein -
  Eco28_RS25130 (Eco28_04842) - 4901458..4901691 (-) 234 WP_001278282.1 DUF905 family protein -
  Eco28_RS25135 (Eco28_04843) - 4901697..4902374 (-) 678 WP_001097364.1 hypothetical protein -
  Eco28_RS25140 (Eco28_04844) - 4902493..4903377 (-) 885 WP_032216515.1 GTPase -
  Eco28_RS25145 (Eco28_04845) - 4903483..4904427 (+) 945 WP_032216516.1 hypothetical protein -

Sequence

Protein


Download         Length: 158 a.a.        Molecular weight: 17630.26 Da        Isoelectric Point: 7.6151

>NTDB_id=182364 Eco28_RS25115 WP_001186710.1 4899492..4899968(-) (radC) [Escherichia coli strain DSM 103246]
MQQLSFLPGAMTPGERSLIQRALKTLDRHLHEPGVAFTSTRAAREWLILNMAGLEREEFRVLYLNNQNQLIAGETLFTGT
INRTEVHPREVIKRALYHNAAAVVLAHNHPSGEVTPSKADRLITERLVQALGLVDIRVPDHLIVGGNQVFSFAEHGLL

Nucleotide


Download         Length: 477 bp        

>NTDB_id=182364 Eco28_RS25115 WP_001186710.1 4899492..4899968(-) (radC) [Escherichia coli strain DSM 103246]
ATGCAACAGCTTTCCTTTCTGCCCGGAGCGATGACGCCCGGCGAGCGCAGCCTTATTCAGCGGGCCCTGAAAACCCTGGA
CCGTCATCTTCATGAACCCGGCGTGGCCTTCACCTCCACCCGTGCGGCACGGGAATGGCTGATTCTGAACATGGCGGGAC
TGGAGCGTGAAGAATTCCGGGTACTGTATCTGAATAACCAGAATCAGCTGATTGCCGGTGAAACCCTCTTCACCGGCACC
ATCAACCGCACGGAAGTCCATCCCCGGGAAGTGATTAAACGCGCCCTGTACCACAATGCCGCTGCCGTGGTGCTGGCGCA
CAATCACCCGTCCGGTGAAGTCACACCCAGTAAGGCAGACCGGCTTATCACCGAACGTCTGGTACAGGCACTGGGCCTGG
TGGATATCCGGGTGCCGGACCATCTGATAGTCGGTGGCAACCAGGTTTTCTCCTTTGCCGAACATGGTCTGCTTTAA

Domains

Predicted by InterProScan.

RadC-like JAB domain (RadC)

(38-157)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radC Haemophilus influenzae Rd KW20

54.867

71.519

0.392