Detailed information    

insolico Bioinformatically predicted

Overview

Name   radC   Type   Machinery gene
Locus tag   Eco28_RS24685 Genome accession   NZ_CP019944
Coordinates   4829674..4830150 (+) Length   158 a.a.
NCBI ID   WP_001186747.1    Uniprot ID   -
Organism   Escherichia coli strain DSM 103246     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 4824674..4835150
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  Eco28_RS24665 (Eco28_04755) - 4825089..4827935 (+) 2847 WP_080030376.1 Ag43/Cah family autotransporter adhesin -
  Eco28_RS24675 (Eco28_04756) - 4828263..4829081 (+) 819 WP_072647787.1 DUF932 domain-containing protein -
  Eco28_RS24680 (Eco28_04757) - 4829173..4829658 (+) 486 WP_072647786.1 antirestriction protein -
  Eco28_RS24685 (Eco28_04758) radC 4829674..4830150 (+) 477 WP_001186747.1 RadC family protein Machinery gene
  Eco28_RS24690 (Eco28_04759) - 4830213..4830434 (+) 222 WP_001405861.1 DUF987 domain-containing protein -
  Eco28_RS24700 (Eco28_04761) - 4830597..4830965 (+) 369 WP_001406130.1 type IV toxin-antitoxin system YeeU family antitoxin -
  Eco28_RS24705 (Eco28_04762) - 4831055..4831432 (+) 378 WP_000854721.1 TA system toxin CbtA family protein -
  Eco28_RS24710 (Eco28_04763) - 4831429..4831917 (+) 489 WP_072647689.1 DUF5983 family protein -
  Eco28_RS24715 (Eco28_04764) - 4831929..4832126 (+) 198 WP_000839239.1 DUF957 domain-containing protein -
  Eco28_RS24720 (Eco28_04765) - 4832211..4833077 (+) 867 WP_072647690.1 DUF4942 domain-containing protein -
  Eco28_RS24725 (Eco28_04766) - 4833149..4833412 (+) 264 WP_001143297.1 type II toxin-antitoxin system ParD family antitoxin -
  Eco28_RS24730 (Eco28_04767) - 4833409..4833735 (+) 327 WP_000779483.1 type II toxin-antitoxin system RelE/ParE family toxin -

Sequence

Protein


Download         Length: 158 a.a.        Molecular weight: 17642.22 Da        Isoelectric Point: 6.9859

>NTDB_id=182363 Eco28_RS24685 WP_001186747.1 4829674..4830150(+) (radC) [Escherichia coli strain DSM 103246]
MQQLSFLPGEMTPGERSLIQRALKTLDRHLHEPGVAFTSTHAAREWLILNMAGLEREEFRVLYLNNQNQLIAGETLFTGT
INRTEVHPREVIKRALYHNAAAVVLAHNHPSGEVTPSKADRLITERLVQALGLVDIRVPDHLIVGGSQVFSFAEHGLL

Nucleotide


Download         Length: 477 bp        

>NTDB_id=182363 Eco28_RS24685 WP_001186747.1 4829674..4830150(+) (radC) [Escherichia coli strain DSM 103246]
ATGCAACAACTTTCCTTTCTGCCCGGAGAGATGACACCCGGTGAGCGCAGCCTCATTCAGCGGGCCCTGAAAACCCTGGA
CCGTCATCTTCATGAACCCGGTGTGGCCTTCACCTCCACGCATGCGGCACGGGAATGGCTGATTCTGAACATGGCAGGAC
TGGAGCGGGAAGAGTTCCGGGTACTGTATCTGAACAACCAGAATCAGCTGATTGCCGGTGAAACCCTCTTCACCGGCACC
ATCAACCGCACGGAAGTCCATCCCCGGGAAGTGATTAAACGCGCCCTGTATCACAATGCCGCTGCCGTGGTGCTGGCACA
CAATCACCCGTCCGGTGAAGTCACACCCAGTAAGGCAGACCGCCTTATCACGGAACGTCTGGTACAGGCACTGGGCCTGG
TGGATATCCGGGTGCCGGACCATCTGATAGTCGGTGGCAGCCAGGTTTTCTCCTTTGCCGAACATGGTCTGCTTTAA

Domains

Predicted by InterProScan.

RadC-like JAB domain (RadC)

(38-157)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radC Haemophilus influenzae Rd KW20

59.615

65.823

0.392