Detailed information    

insolico Bioinformatically predicted

Overview

Name   sxy/tfoX   Type   Regulator
Locus tag   MS6198_RS05450 Genome accession   NZ_CP015834
Coordinates   1111261..1111890 (+) Length   209 a.a.
NCBI ID   WP_000839153.1    Uniprot ID   A0A9Q6Y251
Organism   Escherichia coli strain MS6198     
Function   positive regulator of competence gene (predicted from homology)   
Competence regulation

Genomic Context

Location: 1106261..1116890
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MS6198_RS05425 (MS6198_10990) ycbZ 1106661..1108421 (-) 1761 WP_000156473.1 Lon protease family protein -
  MS6198_RS05430 (MS6198_11000) matP 1108607..1109059 (+) 453 WP_000877161.1 macrodomain Ter protein MatP -
  MS6198_RS05435 (MS6198_11010) ompA 1109136..1110176 (-) 1041 WP_022645481.1 porin OmpA -
  MS6198_RS05445 (MS6198_11020) sulA 1110533..1111042 (-) 510 WP_000288704.1 SOS-induced cell division inhibitor SulA -
  MS6198_RS05450 (MS6198_11030) sxy/tfoX 1111261..1111890 (+) 630 WP_000839153.1 CRP-S regulon transcriptional coactivator Sxy Regulator
  MS6198_RS05455 (MS6198_11040) yccS 1111853..1114015 (-) 2163 WP_000875041.1 YccS family putative transporter -
  MS6198_RS05460 (MS6198_11050) yccF 1114025..1114471 (-) 447 WP_001261235.1 YccF domain-containing protein -
  MS6198_RS05465 (MS6198_11060) helD 1114594..1116648 (+) 2055 WP_022645482.1 DNA helicase IV -

Sequence

Protein


Download         Length: 209 a.a.        Molecular weight: 24147.02 Da        Isoelectric Point: 9.2180

>NTDB_id=182362 MS6198_RS05450 WP_000839153.1 1111261..1111890(+) (sxy/tfoX) [Escherichia coli strain MS6198]
MKSLSYKRIYKSQEYLATLGTIEYRSLFGSYSLTVDDTVFAMVSDGELYLRACEQSAQYCVKHPPVWLTYKKCGRSVTLN
YYRVDESLWRNQLKLVRLSKYSLDAALKEKSTRNTRERLKDLPNMSFHLEAILGEVGIKDVRALRILGAKMCWLRLRQQN
SLVTEKILFMLEGAIIGIHEAALPVARRQELAEWADSLTPKQEFPAELE

Nucleotide


Download         Length: 630 bp        

>NTDB_id=182362 MS6198_RS05450 WP_000839153.1 1111261..1111890(+) (sxy/tfoX) [Escherichia coli strain MS6198]
ATGAAAAGCCTCTCCTATAAGCGGATCTATAAATCACAAGAATACCTGGCAACGTTGGGCACAATTGAATACCGATCATT
GTTTGGTAGTTACAGCCTGACCGTTGACGACACGGTGTTTGCGATGGTTTCTGATGGTGAGTTGTATCTTCGGGCTTGTG
AGCAAAGTGCACAGTACTGTGTAAAACATCCGCCTGTTTGGCTGACATATAAAAAGTGTGGCCGATCCGTTACCCTCAAT
TACTATCGGGTTGATGAAAGTCTATGGCGAAATCAACTGAAGCTGGTGCGTCTGTCGAAATATTCTCTCGATGCAGCGCT
GAAAGAGAAAAGCACGCGCAATACCCGGGAAAGACTGAAAGATTTGCCCAATATGTCTTTTCATCTGGAAGCGATTCTCG
GGGAGGTGGGGATTAAGGATGTACGGGCGTTACGTATACTAGGGGCAAAAATGTGTTGGTTGCGACTGCGGCAGCAAAAC
AGTCTGGTGACAGAAAAGATTCTGTTTATGCTTGAAGGGGCCATTATCGGCATTCATGAAGCTGCGCTCCCGGTGGCACG
CCGCCAGGAGCTTGCAGAATGGGCTGACTCTCTTACGCCGAAACAGGAGTTTCCTGCGGAACTTGAGTAA

Domains

Predicted by InterproScan.

TfoX N-terminal domain (TfoX_N)

(14-106)

TfoX C-terminal domain (TfoX_C)

(116-194)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sxy/tfoX Escherichia coli BW25113 strain K-12

100

100

1

Multiple sequence alignment