Detailed information    

insolico Bioinformatically predicted

Overview

Name   sxy/tfoX   Type   Regulator
Locus tag   A8L39_RS19215 Genome accession   NZ_CP015832
Coordinates   3615897..3616526 (-) Length   209 a.a.
NCBI ID   WP_000839159.1    Uniprot ID   A0AAV3HCB2
Organism   Escherichia coli O157 strain 180-PT54     
Function   positive regulator of competence gene (predicted from homology)   
Competence regulation

Related MGE

Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.

Gene-MGE association summary

MGE type MGE coordinates Gene coordinates Relative position Distance (bp)
ICE 3604819..3627700 3615897..3616526 within 0


Gene organization within MGE regions


Location: 3604819..3627700
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  A8L39_RS19150 - 3604819..3605838 (+) 1020 WP_001299351.1 tyrosine-type recombinase/integrase -
  A8L39_RS19155 yccA 3606246..3606905 (+) 660 WP_000375128.1 FtsH protease modulator YccA -
  A8L39_RS19160 tusE 3606996..3607325 (+) 330 WP_000904442.1 sulfurtransferase TusE -
  A8L39_RS19165 yccX 3607322..3607600 (-) 279 WP_000048252.1 acylphosphatase -
  A8L39_RS19170 rlmI 3607695..3608885 (+) 1191 WP_000116288.1 23S rRNA (cytosine(1962)-C(5))-methyltransferase RlmI -
  A8L39_RS19175 hspQ 3608943..3609260 (+) 318 WP_001295356.1 heat shock protein HspQ -
  A8L39_RS19180 yccU 3609305..3609718 (-) 414 WP_000665217.1 CoA-binding protein -
  A8L39_RS19190 yccT 3609891..3610553 (+) 663 WP_000847791.1 DUF2057 family protein -
  A8L39_RS19195 mgsA 3610649..3611107 (+) 459 WP_000424181.1 methylglyoxal synthase -
  A8L39_RS19200 helD 3611139..3613193 (-) 2055 WP_001301436.1 DNA helicase IV -
  A8L39_RS19205 yccF 3613316..3613762 (+) 447 WP_001261230.1 YccF domain-containing protein -
  A8L39_RS19210 yccS 3613772..3615934 (+) 2163 WP_000875023.1 YccS family putative transporter -
  A8L39_RS19215 sxy/tfoX 3615897..3616526 (-) 630 WP_000839159.1 CRP-S regulon transcriptional coactivator Sxy Regulator
  A8L39_RS19220 sulA 3616745..3617254 (+) 510 WP_000288710.1 SOS-induced cell division inhibitor SulA -
  A8L39_RS19230 ompA 3617611..3618651 (+) 1041 WP_000750416.1 porin OmpA -
  A8L39_RS19235 matP 3618727..3619179 (-) 453 WP_000877161.1 macrodomain Ter protein MatP -
  A8L39_RS19240 ycbZ 3619365..3621125 (+) 1761 WP_000156526.1 Lon protease family protein -
  A8L39_RS19245 fabA 3621194..3621712 (+) 519 WP_000227927.1 bifunctional 3-hydroxydecanoyl-ACP dehydratase/trans-2-decenoyl-ACP isomerase -
  A8L39_RS19250 rmf 3621782..3621949 (-) 168 WP_000828648.1 ribosome modulation factor -
  A8L39_RS19255 pqiC 3622205..3622768 (-) 564 WP_000759107.1 membrane integrity-associated transporter subunit PqiC -
  A8L39_RS19260 pqiB 3622765..3624405 (-) 1641 WP_000445550.1 intermembrane transport protein PqiB -
  A8L39_RS19265 pqiA 3624410..3625663 (-) 1254 WP_000333170.1 membrane integrity-associated transporter subunit PqiA -
  A8L39_RS19270 uup 3625793..3627700 (-) 1908 WP_000053083.1 ABC transporter ATP-binding protein -

Sequence

Protein


Download         Length: 209 a.a.        Molecular weight: 24173.05 Da        Isoelectric Point: 9.1942

>NTDB_id=182353 A8L39_RS19215 WP_000839159.1 3615897..3616526(-) (sxy/tfoX) [Escherichia coli O157 strain 180-PT54]
MKSLSYKRIYKSQEYLATLGTIEYRSLFGSYSLTVDDTVFAMVSDGELYLRACEQSAQYCVKYPPVWLTYKKCGRSVTLN
YYRVDESLWRNQLKLVRLSKYSLDAALKEKSTRNTRERLKDLPNMSFHLEAILGEVGIKDVRALRILGAKMCWLRLRQQN
SLVTEKILFMLEGAIIGIHEAALPVARRQELAEWADSLTPKQEFPAELE

Nucleotide


Download         Length: 630 bp        

>NTDB_id=182353 A8L39_RS19215 WP_000839159.1 3615897..3616526(-) (sxy/tfoX) [Escherichia coli O157 strain 180-PT54]
ATGAAAAGCCTCTCCTATAAGCGGATCTATAAATCACAAGAATACCTGGCAACGTTGGGCACAATTGAATACCGATCATT
GTTTGGCAGTTACAGCCTGACCGTTGACGACACGGTGTTTGCGATGGTTTCTGATGGTGAGTTGTATCTTCGGGCTTGTG
AGCAAAGTGCACAGTACTGTGTAAAATATCCGCCTGTCTGGCTGACATATAAAAAGTGTGGCCGATCCGTTACCCTCAAT
TACTATCGGGTTGATGAAAGTCTATGGCGAAATCAACTGAAGCTGGTGCGTCTGTCGAAATATTCTCTCGATGCAGCGCT
GAAAGAGAAAAGCACGCGCAATACCCGGGAAAGACTGAAAGATTTGCCCAATATGTCTTTTCATCTGGAAGCGATTCTCG
GGGAGGTGGGGATTAAGGATGTACGGGCGTTACGTATACTTGGGGCAAAAATGTGTTGGTTGCGACTGCGGCAGCAAAAC
AGTCTGGTGACAGAAAAGATTCTGTTTATGCTTGAAGGTGCCATTATCGGCATTCATGAAGCTGCGCTCCCGGTGGCACG
CCGCCAGGAGCTTGCAGAATGGGCTGACTCTCTTACGCCGAAACAGGAGTTTCCTGCGGAACTTGAGTAA

Domains

Predicted by InterproScan.

TfoX N-terminal domain (TfoX_N)

(14-106)

TfoX C-terminal domain (TfoX_C)

(116-194)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sxy/tfoX Escherichia coli BW25113 strain K-12

99.522

100

0.995

Multiple sequence alignment