Detailed information    

insolico Bioinformatically predicted

Overview

Name   sxy/tfoX   Type   Regulator
Locus tag   Eco28_RS17150 Genome accession   NZ_CP019944
Coordinates   3302356..3302985 (-) Length   209 a.a.
NCBI ID   WP_000839153.1    Uniprot ID   Q32HU7
Organism   Escherichia coli strain DSM 103246     
Function   positive regulator of competence gene (predicted from homology)   
Competence regulation

Genomic Context

Location: 3297356..3307985
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  Eco28_RS17135 (Eco28_03303) helD 3297598..3299652 (-) 2055 WP_000420536.1 DNA helicase IV -
  Eco28_RS17140 (Eco28_03304) yccF 3299775..3300221 (+) 447 WP_001261231.1 YccF domain-containing protein -
  Eco28_RS17145 (Eco28_03305) yccS 3300231..3302393 (+) 2163 WP_000875044.1 YccS family putative transporter -
  Eco28_RS17150 (Eco28_03306) sxy/tfoX 3302356..3302985 (-) 630 WP_000839153.1 CRP-S regulon transcriptional coactivator Sxy Regulator
  Eco28_RS17155 (Eco28_03307) sulA 3303204..3303713 (+) 510 WP_000288710.1 SOS-induced cell division inhibitor SulA -
  Eco28_RS17165 (Eco28_03308) ompA 3304070..3305122 (+) 1053 WP_021577220.1 porin OmpA -
  Eco28_RS17170 (Eco28_03309) matP 3305198..3305650 (-) 453 WP_000877158.1 macrodomain Ter protein MatP -
  Eco28_RS17175 (Eco28_03310) ycbZ 3305836..3307596 (+) 1761 WP_021577219.1 Lon protease family protein -

Sequence

Protein


Download         Length: 209 a.a.        Molecular weight: 24147.02 Da        Isoelectric Point: 9.2180

>NTDB_id=182347 Eco28_RS17150 WP_000839153.1 3302356..3302985(-) (sxy/tfoX) [Escherichia coli strain DSM 103246]
MKSLSYKRIYKSQEYLATLGTIEYRSLFGSYSLTVDDTVFAMVSDGELYLRACEQSAQYCVKHPPVWLTYKKCGRSVTLN
YYRVDESLWRNQLKLVRLSKYSLDAALKEKSTRNTRERLKDLPNMSFHLEAILGEVGIKDVRALRILGAKMCWLRLRQQN
SLVTEKILFMLEGAIIGIHEAALPVARRQELAEWADSLTPKQEFPAELE

Nucleotide


Download         Length: 630 bp        

>NTDB_id=182347 Eco28_RS17150 WP_000839153.1 3302356..3302985(-) (sxy/tfoX) [Escherichia coli strain DSM 103246]
ATGAAAAGCCTCTCCTATAAGCGGATCTATAAATCACAAGAATACCTGGCAACGTTGGGCACAATTGAATACCGATCATT
GTTTGGCAGTTACAGCCTGACCGTTGACGACACGGTGTTTGCGATGGTTTCTGATGGTGAGTTGTATCTTCGGGCTTGTG
AGCAAAGTGCACAGTACTGTGTAAAACATCCGCCTGTCTGGCTGACATATAAAAAGTGTGGCCGATCCGTTACCCTCAAT
TACTATCGGGTTGATGAAAGTCTATGGCGAAATCAACTGAAGCTGGTGCGTCTGTCGAAATATTCTCTCGATGCAGCGCT
GAAAGAGAAAAGCACGCGCAATACCCGGGAAAGACTGAAAGATTTGCCCAATATGTCTTTTCATCTGGAAGCGATTCTCG
GGGAGGTGGGGATTAAGGATGTACGGGCGTTACGTATACTTGGGGCAAAAATGTGTTGGTTGCGACTGCGGCAGCAAAAC
AGTCTGGTGACAGAAAAGATTCTGTTTATGCTTGAAGGTGCCATTATCGGCATTCATGAAGCTGCGCTCCCGGTGGCACG
CCGCCAGGAGCTTGCAGAATGGGCTGACTCTCTTACGCCGAAACAGGAGTTTCCTGCGGAACTTGAGTAA

Domains

Predicted by InterProScan.

TfoX N-terminal domain (TfoX_N)

(14-106)

TfoX C-terminal domain (TfoX_C)

(116-194)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB Q32HU7

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sxy/tfoX Escherichia coli BW25113 strain K-12

100

100

1