Detailed information    

insolico Bioinformatically predicted

Overview

Name   radC   Type   Machinery gene
Locus tag   Eco28_RS16355 Genome accession   NZ_CP019944
Coordinates   3135826..3136302 (-) Length   158 a.a.
NCBI ID   WP_001470113.1    Uniprot ID   -
Organism   Escherichia coli strain DSM 103246     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 3130826..3141302
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  Eco28_RS16310 (Eco28_03155) ghrA 3130946..3131884 (-) 939 WP_000351322.1 glyoxylate/hydroxypyruvate reductase GhrA -
  Eco28_RS16320 (Eco28_03157) - 3132355..3133197 (-) 843 WP_072693077.1 DUF4942 domain-containing protein -
  Eco28_RS16325 (Eco28_03158) - 3133294..3133491 (-) 198 WP_000839234.1 DUF957 domain-containing protein -
  Eco28_RS16330 (Eco28_03159) - 3133503..3133991 (-) 489 WP_000761708.1 DUF5983 family protein -
  Eco28_RS16335 (Eco28_03160) - 3133988..3134365 (-) 378 WP_000854768.1 TA system toxin CbtA family protein -
  Eco28_RS16340 (Eco28_03161) - 3134455..3134823 (-) 369 WP_024179191.1 type IV toxin-antitoxin system YeeU family antitoxin -
  Eco28_RS16345 (Eco28_03162) - 3134873..3135517 (-) 645 WP_000086766.1 hypothetical protein -
  Eco28_RS16350 (Eco28_03163) - 3135536..3135757 (-) 222 WP_000692290.1 DUF987 domain-containing protein -
  Eco28_RS16355 (Eco28_03164) radC 3135826..3136302 (-) 477 WP_001470113.1 RadC family protein Machinery gene
  Eco28_RS16360 (Eco28_03165) - 3136318..3136803 (-) 486 WP_000206651.1 antirestriction protein -
  Eco28_RS16365 (Eco28_03166) - 3136896..3137714 (-) 819 WP_080030209.1 DUF932 domain-containing protein -
  Eco28_RS16380 (Eco28_03167) - 3138054..3139124 (-) 1071 WP_029399299.1 patatin-like phospholipase family protein -
  Eco28_RS16385 (Eco28_03168) - 3139121..3140026 (-) 906 WP_000203566.1 diguanylate cyclase regulator RdcB family protein -

Sequence

Protein


Download         Length: 158 a.a.        Molecular weight: 17655.22 Da        Isoelectric Point: 6.9859

>NTDB_id=182346 Eco28_RS16355 WP_001470113.1 3135826..3136302(-) (radC) [Escherichia coli strain DSM 103246]
MQQLSFLPGEMTPGERSLIQRALKTLDRHLHEPGVAFTSTHAAREWLILNMAGLEREEFRALYLNNQNQLIAGETLFTGT
INRTEVHPREVIKRALYHNAAAVVLAHNHPSGEVTPSKADRLITERLVQALALVDIRVPDHLIVGGNQVFSFAEHGLL

Nucleotide


Download         Length: 477 bp        

>NTDB_id=182346 Eco28_RS16355 WP_001470113.1 3135826..3136302(-) (radC) [Escherichia coli strain DSM 103246]
ATGCAACAGCTTTCCTTTCTGCCCGGAGAGATGACGCCCGGCGAACGCAGCCTCATTCAGCGGGCCCTGAAAACCCTGGA
CCGCCATCTTCATGAACCCGGCGTGGCCTTTACCTCCACGCATGCGGCACGGGAATGGCTGATTCTGAACATGGCAGGAC
TGGAGCGTGAAGAGTTCCGGGCGCTGTATCTGAACAACCAGAATCAGCTGATTGCCGGTGAAACCCTCTTCACCGGCACC
ATCAACCGCACGGAAGTCCATCCCCGGGAGGTGATTAAACGCGCCCTGTACCACAATGCCGCTGCCGTGGTGCTGGCACA
CAATCACCCGTCCGGTGAAGTCACCCCCAGTAAGGCAGACCGCCTTATTACGGAACGTCTGGTACAGGCACTGGCCCTGG
TGGATATCCGGGTACCGGACCATCTGATAGTTGGTGGCAACCAGGTTTTCTCCTTTGCGGAACACGGCCTGCTTTAA

Domains

Predicted by InterProScan.

RadC-like JAB domain (RadC)

(38-157)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radC Haemophilus influenzae Rd KW20

57.692

65.823

0.38

Multiple sequence alignment