Detailed information    

insolico Bioinformatically predicted

Overview

Name   radC   Type   Machinery gene
Locus tag   Eco28_RS10235 Genome accession   NZ_CP019944
Coordinates   2007946..2008422 (-) Length   158 a.a.
NCBI ID   WP_001186773.1    Uniprot ID   -
Organism   Escherichia coli strain DSM 103246     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2002946..2013422
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  Eco28_RS10190 (Eco28_01987) sbmC 2003438..2003911 (+) 474 WP_001105415.1 DNA gyrase inhibitor SbmC -
  Eco28_RS10195 (Eco28_01988) yeeA 2004109..2005167 (+) 1059 WP_001200891.1 FUSC family protein -
  Eco28_RS10200 (Eco28_01989) tmaR 2005339..2005668 (+) 330 WP_000450409.1 DUF496 family protein -
  Eco28_RS10205 - 2005769..2005951 (-) 183 WP_001016348.1 EutP/PduV family microcompartment system protein -
  Eco28_RS10210 - 2006023..2006151 (+) 129 Protein_1903 transposase domain-containing protein -
  Eco28_RS28065 - 2006440..2006520 (-) 81 Protein_1904 hypothetical protein -
  Eco28_RS10215 (Eco28_01990) yeeW 2006566..2006760 (-) 195 WP_000988600.1 DUF5983 family protein -
  Eco28_RS10220 (Eco28_01991) cbtA 2006757..2007131 (-) 375 WP_000854814.1 type IV toxin-antitoxin system cytoskeleton-binding toxin CbtA -
  Eco28_RS10225 (Eco28_01992) cbeA 2007220..2007588 (-) 369 WP_001285585.1 type IV toxin-antitoxin system cytoskeleton bundling-enhancing antitoxin CbeA -
  Eco28_RS10230 (Eco28_01993) yeeT 2007662..2007883 (-) 222 WP_000692323.1 DUF987 domain-containing protein -
  Eco28_RS10235 (Eco28_01994) radC 2007946..2008422 (-) 477 WP_001186773.1 RadC family protein Machinery gene
  Eco28_RS10240 (Eco28_01995) - 2008438..2008917 (-) 480 WP_000860076.1 antirestriction protein -
  Eco28_RS10245 (Eco28_01996) - 2008999..2009820 (-) 822 WP_001234530.1 DUF932 domain-containing protein -
  Eco28_RS10255 (Eco28_01997) - 2010041..2010451 (-) 411 WP_000846713.1 hypothetical protein -
  Eco28_RS10260 (Eco28_01998) - 2010467..2011150 (-) 684 WP_080030092.1 hypothetical protein -
  Eco28_RS10265 (Eco28_01999) - 2011286..2012356 (-) 1071 WP_000102643.1 patatin-like phospholipase family protein -
  Eco28_RS10270 (Eco28_02000) - 2012353..2013258 (-) 906 WP_080030093.1 diguanylate cyclase regulator RdcB family protein -

Sequence

Protein


Download         Length: 158 a.a.        Molecular weight: 17688.29 Da        Isoelectric Point: 7.2020

>NTDB_id=182335 Eco28_RS10235 WP_001186773.1 2007946..2008422(-) (radC) [Escherichia coli strain DSM 103246]
MQQLSFLPGEMTPGERSLIQRALKTLDRHLHEPGVAFTSTRAAREWLILNMAGLEREEFRVLYLNNQNQLIAGETLFTGT
INRTEVHPREVIKRALYHNAAAVVLAHNHPSGEVTPSKADRLITERLVQALGLVDIRVPDHLIVGGNQVFSFAEHGLL

Nucleotide


Download         Length: 477 bp        

>NTDB_id=182335 Eco28_RS10235 WP_001186773.1 2007946..2008422(-) (radC) [Escherichia coli strain DSM 103246]
ATGCAACAACTTTCCTTTCTGCCCGGAGAGATGACGCCCGGCGAGCGCAGCCTCATTCAGCGGGCCCTGAAAACCCTGGA
CCGCCATCTTCATGAACCCGGCGTGGCCTTCACCTCCACCCGTGCAGCACGGGAATGGCTGATTCTGAACATGGCGGGAC
TGGAGCGTGAAGAATTCCGGGTGCTGTATCTGAACAACCAGAATCAGCTGATTGCCGGTGAAACCCTCTTCACCGGCACC
ATCAACCGCACGGAAGTCCATCCCCGGGAAGTGATTAAACGCGCCCTGTACCACAATGCCGCTGCCGTGGTACTGGCACA
CAATCACCCGTCCGGTGAAGTCACACCCAGTAAGGCAGACCGGCTTATCACCGAACGTCTGGTACAGGCACTGGGCCTGG
TGGATATCCGGGTGCCGGACCATCTGATAGTCGGTGGCAACCAGGTTTTCTCCTTTGCCGAACATGGTCTGCTTTAA

Domains

Predicted by InterProScan.

RadC-like JAB domain (RadC)

(38-157)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radC Haemophilus influenzae Rd KW20

54.867

71.519

0.392