Detailed information    

insolico Bioinformatically predicted

Overview

Name   sbcB   Type   Machinery gene
Locus tag   Eco28_RS10180 Genome accession   NZ_CP019944
Coordinates   2000517..2001944 (-) Length   475 a.a.
NCBI ID   WP_000980570.1    Uniprot ID   -
Organism   Escherichia coli strain DSM 103246     
Function   promote homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1995517..2006944
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  Eco28_RS10155 (Eco28_01979) yeeZ 1995572..1996396 (+) 825 WP_000754737.1 SDR family oxidoreductase -
  Eco28_RS10160 (Eco28_01980) yeeY 1996442..1997371 (+) 930 WP_000803360.1 LysR substrate-binding domain-containing protein -
  Eco28_RS28060 yoeI 1997586..1997648 (+) 63 WP_010723108.1 membrane protein YoeI -
  Eco28_RS10165 (Eco28_01982) plaP 1997638..1998996 (+) 1359 WP_000019197.1 putrescine/proton symporter PlaP -
  Eco28_RS10170 (Eco28_01983) tsuA 1999175..2000233 (+) 1059 WP_072769027.1 thiosulfate utilization transporter TsuA/YeeE -
  Eco28_RS10175 (Eco28_01984) tsuB 2000247..2000474 (+) 228 WP_000985273.1 thiosulfate utilization sulfurtransferase TsuB/YeeD -
  Eco28_RS10180 (Eco28_01985) sbcB 2000517..2001944 (-) 1428 WP_000980570.1 exodeoxyribonuclease I Machinery gene
  Eco28_RS10185 (Eco28_01986) dacD 2002153..2003319 (+) 1167 WP_001310935.1 serine-type D-Ala-D-Ala carboxypeptidase DacD -
  Eco28_RS10190 (Eco28_01987) sbmC 2003438..2003911 (+) 474 WP_001105415.1 DNA gyrase inhibitor SbmC -
  Eco28_RS10195 (Eco28_01988) yeeA 2004109..2005167 (+) 1059 WP_001200891.1 FUSC family protein -
  Eco28_RS10200 (Eco28_01989) tmaR 2005339..2005668 (+) 330 WP_000450409.1 DUF496 family protein -
  Eco28_RS10205 - 2005769..2005951 (-) 183 WP_001016348.1 EutP/PduV family microcompartment system protein -
  Eco28_RS10210 - 2006023..2006151 (+) 129 Protein_1903 transposase domain-containing protein -
  Eco28_RS28065 - 2006440..2006520 (-) 81 Protein_1904 hypothetical protein -
  Eco28_RS10215 (Eco28_01990) yeeW 2006566..2006760 (-) 195 WP_000988600.1 DUF5983 family protein -

Sequence

Protein


Download         Length: 475 a.a.        Molecular weight: 54529.81 Da        Isoelectric Point: 5.4720

>NTDB_id=182334 Eco28_RS10180 WP_000980570.1 2000517..2001944(-) (sbcB) [Escherichia coli strain DSM 103246]
MMNDGKQQSTFLFHDYETFGTHPALDRPAQFAAIRTDNEFNVIGEPEVFYCKPADDYLPQPGAVLITGITPQEARAKGEN
EATFAARIHSLFTVPKTCILGYNNVRFDDEVTRNVFYRNFYDPYAWSWQHDNSRWDLLDVMRACYALRPEGINWPENDDG
LPSFRLEHLTKANGIEHSNAHDAMADVYATIAMAKLVKTRQPRLFDYLFTHRNKHKLMALIDVPQMKPLVHVSGMFGAWR
GNTSWVAPLAWHPENRNAVIMVDLAGDISPLLELDSDTLRERLYTAKTDLGDNAAVPVKLVHINKCPVLAQANTLRPEDA
DRLGINRQHCLDNLKILRENPQVREKVVAIFAEAEPFTPSDNVDAQLYNGFFSDADRAAMKIVLETEPRNLPALDITFVD
KRIEKLLFNYRARNFPGTLDYAEQQRWLEHRRQVFTPEFLQGYAEEIQMLAQQYADDKEKVALLKALWQYAEEIV

Nucleotide


Download         Length: 1428 bp        

>NTDB_id=182334 Eco28_RS10180 WP_000980570.1 2000517..2001944(-) (sbcB) [Escherichia coli strain DSM 103246]
ATGATGAATGACGGTAAGCAACAATCTACCTTTTTGTTTCACGATTACGAAACCTTTGGAACGCACCCCGCGTTAGATCG
CCCTGCACAGTTCGCAGCCATTCGCACTGATAACGAATTCAATGTCATCGGCGAACCCGAAGTCTTTTACTGCAAGCCCG
CGGATGACTATTTACCCCAGCCTGGAGCAGTATTAATTACCGGTATTACCCCGCAGGAAGCACGGGCGAAAGGAGAAAAC
GAAGCCACGTTTGCCGCCCGTATTCACTCGCTTTTTACCGTACCGAAGACCTGTATTCTGGGCTACAACAATGTGCGTTT
CGACGACGAAGTCACACGCAACGTTTTTTATCGTAATTTCTACGATCCTTACGCCTGGAGCTGGCAGCATGATAACTCGC
GCTGGGATTTACTGGATGTTATGCGTGCCTGTTATGCCCTGCGCCCGGAAGGAATAAACTGGCCTGAAAATGATGACGGT
CTACCGAGCTTTCGCCTTGAGCATTTAACCAAAGCGAATGGTATTGAACATAGCAACGCCCACGATGCGATGGCTGATGT
GTACGCCACTATTGCGATGGCGAAACTGGTAAAAACGCGTCAGCCACGCCTGTTTGATTATCTCTTTACCCATCGTAATA
AACACAAACTGATGGCGTTGATTGATGTTCCGCAGATGAAACCCCTGGTTCACGTTTCCGGAATGTTTGGGGCATGGCGC
GGCAATACCAGCTGGGTGGCACCGCTGGCGTGGCATCCAGAAAATCGCAATGCCGTAATTATGGTGGATTTGGCAGGAGA
CATTTCGCCATTACTGGAACTGGATAGCGACACATTGCGCGAGCGTTTATATACCGCAAAAACCGATCTTGGCGATAACG
CCGCCGTTCCGGTTAAGCTGGTGCATATCAATAAATGTCCGGTGCTGGCCCAGGCGAATACGCTACGCCCGGAAGATGCC
GACCGACTGGGAATTAATCGTCAGCATTGCCTCGATAACCTAAAAATTCTGCGTGAAAATCCGCAAGTGCGCGAAAAAGT
GGTGGCGATATTCGCGGAAGCCGAACCGTTTACGCCTTCAGATAACGTGGATGCACAGCTTTATAACGGCTTTTTCAGTG
ACGCCGATCGCGCAGCAATGAAAATTGTGCTGGAAACCGAGCCACGTAATTTACCGGCACTGGATATCACTTTTGTTGAT
AAACGAATTGAAAAACTGTTGTTCAATTATCGGGCGCGCAACTTCCCGGGGACGCTGGATTATGCCGAGCAGCAACGCTG
GCTGGAGCACCGCCGCCAGGTATTCACACCCGAGTTTTTACAAGGCTATGCAGAAGAGATTCAGATGCTGGCGCAGCAGT
ATGCCGACGATAAAGAAAAAGTGGCGCTGTTAAAAGCGCTTTGGCAGTACGCGGAAGAGATCGTCTAG

Domains

Predicted by InterProScan.

Exonuclease (RNase_T)

(13-188)

Exonuclease C-terminal (ExoI_SH3)

(212-472)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sbcB Vibrio cholerae O1 biovar El Tor strain E7946

58.723

98.947

0.581