Detailed information    

insolico Bioinformatically predicted

Overview

Name   sxy/tfoX   Type   Regulator
Locus tag   A8L40_RS20660 Genome accession   NZ_CP015831
Coordinates   3871562..3872191 (-) Length   209 a.a.
NCBI ID   WP_000839159.1    Uniprot ID   A0AAV3HCB2
Organism   Escherichia coli O157 strain 644-PT8     
Function   positive regulator of competence gene (predicted from homology)   
Competence regulation

Related MGE

Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.

Gene-MGE association summary

MGE type MGE coordinates Gene coordinates Relative position Distance (bp)
ICE 3860484..3883365 3871562..3872191 within 0


Gene organization within MGE regions


Location: 3860484..3883365
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  A8L40_RS20595 - 3860484..3861503 (+) 1020 WP_001299351.1 tyrosine-type recombinase/integrase -
  A8L40_RS20600 yccA 3861911..3862570 (+) 660 WP_000375128.1 FtsH protease modulator YccA -
  A8L40_RS20605 tusE 3862661..3862990 (+) 330 WP_000904442.1 sulfurtransferase TusE -
  A8L40_RS20610 yccX 3862987..3863265 (-) 279 WP_000048252.1 acylphosphatase -
  A8L40_RS20615 rlmI 3863360..3864550 (+) 1191 WP_000116288.1 23S rRNA (cytosine(1962)-C(5))-methyltransferase RlmI -
  A8L40_RS20620 hspQ 3864608..3864925 (+) 318 WP_001295356.1 heat shock protein HspQ -
  A8L40_RS20625 yccU 3864970..3865383 (-) 414 WP_000665217.1 CoA-binding protein -
  A8L40_RS20635 yccT 3865556..3866218 (+) 663 WP_000847791.1 DUF2057 family protein -
  A8L40_RS20640 mgsA 3866314..3866772 (+) 459 WP_000424181.1 methylglyoxal synthase -
  A8L40_RS20645 helD 3866804..3868858 (-) 2055 WP_001301436.1 DNA helicase IV -
  A8L40_RS20650 yccF 3868981..3869427 (+) 447 WP_001261230.1 YccF domain-containing protein -
  A8L40_RS20655 yccS 3869437..3871599 (+) 2163 WP_000875023.1 YccS family putative transporter -
  A8L40_RS20660 sxy/tfoX 3871562..3872191 (-) 630 WP_000839159.1 CRP-S regulon transcriptional coactivator Sxy Regulator
  A8L40_RS20665 sulA 3872410..3872919 (+) 510 WP_000288710.1 SOS-induced cell division inhibitor SulA -
  A8L40_RS20675 ompA 3873276..3874316 (+) 1041 WP_000750416.1 porin OmpA -
  A8L40_RS20680 matP 3874392..3874844 (-) 453 WP_000877161.1 macrodomain Ter protein MatP -
  A8L40_RS20685 ycbZ 3875030..3876790 (+) 1761 WP_000156526.1 Lon protease family protein -
  A8L40_RS20690 fabA 3876859..3877377 (+) 519 WP_000227927.1 bifunctional 3-hydroxydecanoyl-ACP dehydratase/trans-2-decenoyl-ACP isomerase -
  A8L40_RS20695 rmf 3877447..3877614 (-) 168 WP_000828648.1 ribosome modulation factor -
  A8L40_RS20700 pqiC 3877870..3878433 (-) 564 WP_000759107.1 membrane integrity-associated transporter subunit PqiC -
  A8L40_RS20705 pqiB 3878430..3880070 (-) 1641 WP_000445550.1 intermembrane transport protein PqiB -
  A8L40_RS20710 pqiA 3880075..3881328 (-) 1254 WP_000333170.1 membrane integrity-associated transporter subunit PqiA -
  A8L40_RS20715 uup 3881458..3883365 (-) 1908 WP_000053083.1 ABC transporter ATP-binding protein -

Sequence

Protein


Download         Length: 209 a.a.        Molecular weight: 24173.05 Da        Isoelectric Point: 9.1942

>NTDB_id=182330 A8L40_RS20660 WP_000839159.1 3871562..3872191(-) (sxy/tfoX) [Escherichia coli O157 strain 644-PT8]
MKSLSYKRIYKSQEYLATLGTIEYRSLFGSYSLTVDDTVFAMVSDGELYLRACEQSAQYCVKYPPVWLTYKKCGRSVTLN
YYRVDESLWRNQLKLVRLSKYSLDAALKEKSTRNTRERLKDLPNMSFHLEAILGEVGIKDVRALRILGAKMCWLRLRQQN
SLVTEKILFMLEGAIIGIHEAALPVARRQELAEWADSLTPKQEFPAELE

Nucleotide


Download         Length: 630 bp        

>NTDB_id=182330 A8L40_RS20660 WP_000839159.1 3871562..3872191(-) (sxy/tfoX) [Escherichia coli O157 strain 644-PT8]
ATGAAAAGCCTCTCCTATAAGCGGATCTATAAATCACAAGAATACCTGGCAACGTTGGGCACAATTGAATACCGATCATT
GTTTGGCAGTTACAGCCTGACCGTTGACGACACGGTGTTTGCGATGGTTTCTGATGGTGAGTTGTATCTTCGGGCTTGTG
AGCAAAGTGCACAGTACTGTGTAAAATATCCGCCTGTCTGGCTGACATATAAAAAGTGTGGCCGATCCGTTACCCTCAAT
TACTATCGGGTTGATGAAAGTCTATGGCGAAATCAACTGAAGCTGGTGCGTCTGTCGAAATATTCTCTCGATGCAGCGCT
GAAAGAGAAAAGCACGCGCAATACCCGGGAAAGACTGAAAGATTTGCCCAATATGTCTTTTCATCTGGAAGCGATTCTCG
GGGAGGTGGGGATTAAGGATGTACGGGCGTTACGTATACTTGGGGCAAAAATGTGTTGGTTGCGACTGCGGCAGCAAAAC
AGTCTGGTGACAGAAAAGATTCTGTTTATGCTTGAAGGTGCCATTATCGGCATTCATGAAGCTGCGCTCCCGGTGGCACG
CCGCCAGGAGCTTGCAGAATGGGCTGACTCTCTTACGCCGAAACAGGAGTTTCCTGCGGAACTTGAGTAA

Domains

Predicted by InterproScan.

TfoX N-terminal domain (TfoX_N)

(14-106)

TfoX C-terminal domain (TfoX_C)

(116-194)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sxy/tfoX Escherichia coli BW25113 strain K-12

99.522

100

0.995

Multiple sequence alignment