Detailed information    

insolico Bioinformatically predicted

Overview

Name   luxS   Type   Regulator
Locus tag   Eco28_RS06155 Genome accession   NZ_CP019944
Coordinates   1203356..1203871 (+) Length   171 a.a.
NCBI ID   WP_001130211.1    Uniprot ID   A0ABR8T9Y4
Organism   Escherichia coli strain DSM 103246     
Function   induction of competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 1198356..1208871
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  Eco28_RS06115 (Eco28_01181) csrA 1199217..1199402 (+) 186 WP_000906486.1 carbon storage regulator CsrA -
  Eco28_RS06140 (Eco28_01186) yqaB 1200586..1201152 (+) 567 WP_000273293.1 fructose-1-phosphate/6-phosphogluconate phosphatase -
  Eco28_RS06145 (Eco28_01187) yqaA 1201149..1201577 (+) 429 WP_001287454.1 YqaA family protein -
  Eco28_RS06150 (Eco28_01188) gshA 1201650..1203206 (+) 1557 WP_000611807.1 glutamate--cysteine ligase -
  Eco28_RS06155 (Eco28_01190) luxS 1203356..1203871 (+) 516 WP_001130211.1 S-ribosylhomocysteine lyase Regulator
  Eco28_RS06160 (Eco28_01191) emrB 1203935..1205473 (-) 1539 WP_001295176.1 multidrug efflux MFS transporter permease subunit EmrB -
  Eco28_RS06165 (Eco28_01192) emrA 1205490..1206662 (-) 1173 WP_001295175.1 multidrug efflux MFS transporter periplasmic adaptor subunit EmrA -
  Eco28_RS06170 (Eco28_01193) emrR 1206789..1207319 (-) 531 WP_000378442.1 multidrug efflux transporter EmrAB transcriptional repressor EmrR -
  Eco28_RS06175 (Eco28_01194) ygaH 1207410..1207745 (-) 336 WP_000119749.1 L-valine transporter subunit YgaH -
  Eco28_RS06180 (Eco28_01195) ygaZ 1207735..1208472 (-) 738 WP_000445658.1 L-valine exporter subunit YgaZ -

Sequence

Protein


Download         Length: 171 a.a.        Molecular weight: 19416.19 Da        Isoelectric Point: 5.0362

>NTDB_id=182325 Eco28_RS06155 WP_001130211.1 1203356..1203871(+) (luxS) [Escherichia coli strain DSM 103246]
MPLLDSFTVDHTRMEAPAVRVAKTMNTPHGDAITVFDLRFCVPNKEVMPERGIHTLEHLFAGFMRNHLNGNGVEIIDISP
MGCRTGFYMSLIGTPDEQRVADAWKAAMEDVLKVQDQNQIPELNVYQCGTYQMHSLQEAQDIARSILERDVRINSNEELA
LPKEKLQELHI

Nucleotide


Download         Length: 516 bp        

>NTDB_id=182325 Eco28_RS06155 WP_001130211.1 1203356..1203871(+) (luxS) [Escherichia coli strain DSM 103246]
ATGCCGTTGTTAGATAGCTTCACAGTCGATCATACCCGGATGGAAGCGCCTGCAGTTCGGGTGGCGAAAACAATGAACAC
CCCGCATGGCGACGCAATCACCGTGTTCGATCTGCGCTTCTGCGTGCCGAACAAAGAAGTGATGCCAGAAAGAGGGATCC
ATACCCTGGAGCACCTGTTTGCTGGTTTTATGCGTAACCATCTTAACGGTAATGGTGTAGAGATTATCGATATCTCGCCA
ATGGGCTGCCGCACCGGTTTTTATATGAGTCTGATTGGTACGCCAGATGAGCAGCGTGTTGCTGATGCCTGGAAAGCGGC
AATGGAAGACGTGCTGAAAGTGCAGGATCAGAATCAGATCCCGGAACTGAACGTCTACCAGTGTGGCACTTACCAGATGC
ACTCGTTGCAGGAAGCACAGGATATTGCGCGTAGCATTCTGGAACGTGACGTGCGCATCAACAGCAACGAAGAACTGGCG
CTGCCGAAAGAGAAGTTGCAGGAACTGCACATTTAG

Domains

Predicted by InterProScan.

S-Ribosylhomocysteinase (LuxS) (LuxS)

(4-152)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  luxS Vibrio cholerae strain A1552

73.099

100

0.731