Detailed information    

insolico Bioinformatically predicted

Overview

Name   radC   Type   Machinery gene
Locus tag   Eco28_RS04275 Genome accession   NZ_CP019944
Coordinates   841883..842359 (-) Length   158 a.a.
NCBI ID   WP_001186780.1    Uniprot ID   -
Organism   Escherichia coli strain DSM 103246     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 836883..847359
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  Eco28_RS04245 (Eco28_00817) - 837753..839020 (-) 1268 Protein_779 integrase arm-type DNA-binding domain-containing protein -
  Eco28_RS04250 (Eco28_00819) - 839314..840156 (-) 843 WP_080029955.1 DUF4942 domain-containing protein -
  Eco28_RS27955 - 840241..840438 (-) 198 WP_087904847.1 DUF957 domain-containing protein -
  Eco28_RS27960 - 840514..840663 (-) 150 Protein_782 DUF5983 family protein -
  Eco28_RS04260 (Eco28_00821) cbtA 840660..841037 (-) 378 WP_000854821.1 type IV toxin-antitoxin system cytoskeleton-binding toxin CbtA -
  Eco28_RS04265 (Eco28_00822) cbeA 841127..841495 (-) 369 WP_080029956.1 type IV toxin-antitoxin system cytoskeleton bundling-enhancing antitoxin CbeA -
  Eco28_RS04270 (Eco28_00823) - 841575..841796 (-) 222 WP_000692350.1 DUF987 domain-containing protein -
  Eco28_RS04275 (Eco28_00824) radC 841883..842359 (-) 477 WP_001186780.1 RadC family protein Machinery gene
  Eco28_RS04280 (Eco28_00825) - 842375..842860 (-) 486 WP_000213716.1 antirestriction protein -
  Eco28_RS04285 (Eco28_00826) - 842952..843770 (-) 819 WP_053271315.1 DUF932 domain-containing protein -
  Eco28_RS04290 - 843860..844069 (-) 210 WP_032150870.1 DUF905 family protein -
  Eco28_RS04295 (Eco28_00827) - 844099..844776 (-) 678 WP_001097301.1 hypothetical protein -
  Eco28_RS04300 (Eco28_00828) - 844924..845604 (-) 681 WP_001282919.1 WYL domain-containing protein -
  Eco28_RS04305 (Eco28_00830) - 845807..846691 (-) 885 WP_000010408.1 GTPase -

Sequence

Protein


Download         Length: 158 a.a.        Molecular weight: 17646.21 Da        Isoelectric Point: 6.9859

>NTDB_id=182318 Eco28_RS04275 WP_001186780.1 841883..842359(-) (radC) [Escherichia coli strain DSM 103246]
MQQLSFLPGEMTPGERSLIQRALKTLDRHLHESGVAFTSTHAAREWLILNMAGLEREEFRVLYLNNQNQLIAGETLFTGT
INRTEVHPREVIKRALYHNAAAVVLAHNHPSGEVTPSKADRLITERLVQALALVDIRVPDHLIVGGSQVFSFAEHGLL

Nucleotide


Download         Length: 477 bp        

>NTDB_id=182318 Eco28_RS04275 WP_001186780.1 841883..842359(-) (radC) [Escherichia coli strain DSM 103246]
ATGCAACAGCTTTCCTTTCTGCCCGGAGAGATGACGCCCGGCGAGCGCAGCCTCATTCAACGGGCCCTGAAAACCCTGGA
CCGCCATCTTCATGAGTCCGGCGTGGCCTTCACCTCCACGCATGCGGCACGGGAATGGCTGATTCTGAACATGGCAGGAC
TGGAGCGGGAAGAGTTCCGGGTGCTGTATCTGAACAACCAGAATCAGCTGATTGCGGGTGAAACCCTCTTCACAGGCACC
ATCAACCGCACAGAAGTCCATCCCCGGGAGGTGATTAAACGTGCCCTGTACCACAATGCCGCTGCCGTGGTGCTGGCGCA
CAATCACCCGTCCGGTGAAGTCACCCCCAGTAAGGCAGACCGGCTTATCACTGAACGTCTGGTACAGGCGCTGGCCCTGG
TGGATATCCGGGTGCCGGACCATCTGATAGTCGGTGGCAGCCAGGTATTCTCCTTTGCCGAACACGGTCTGCTTTAA

Domains

Predicted by InterProScan.

RadC-like JAB domain (RadC)

(38-157)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radC Haemophilus influenzae Rd KW20

59.615

65.823

0.392

Multiple sequence alignment