Detailed information    

insolico Bioinformatically predicted

Overview

Name   radC   Type   Machinery gene
Locus tag   Eco28_RS00415 Genome accession   NZ_CP019944
Coordinates   92499..93167 (+) Length   222 a.a.
NCBI ID   WP_033815110.1    Uniprot ID   -
Organism   Escherichia coli strain DSM 103246     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 87499..98167
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  Eco28_RS00380 (Eco28_00076) yicC 87518..88381 (-) 864 WP_000621326.1 YicC/YloC family endoribonuclease -
  Eco28_RS00390 (Eco28_00077) rph 88508..89224 (+) 717 WP_001247093.1 ribonuclease PH -
  Eco28_RS00395 (Eco28_00078) pyrE 89290..89931 (+) 642 WP_000806177.1 orotate phosphoribosyltransferase -
  Eco28_RS00400 (Eco28_00079) slmA 89968..90564 (-) 597 WP_000818603.1 nucleoid occlusion factor SlmA -
  Eco28_RS00405 (Eco28_00080) dut 90671..91129 (-) 459 WP_033815112.1 dUTP diphosphatase -
  Eco28_RS00410 (Eco28_00081) coaBC 91107..92327 (-) 1221 WP_033815111.1 bifunctional phosphopantothenoylcysteine decarboxylase/phosphopantothenate--cysteine ligase CoaBC -
  Eco28_RS00415 (Eco28_00082) radC 92499..93167 (+) 669 WP_033815110.1 DNA repair protein RadC Machinery gene
  Eco28_RS00420 (Eco28_00083) rpmB 93384..93620 (+) 237 WP_000091955.1 50S ribosomal protein L28 -
  Eco28_RS00425 (Eco28_00084) rpmG 93641..93808 (+) 168 WP_001051798.1 50S ribosomal protein L33 -
  Eco28_RS00430 (Eco28_00085) mutM 93906..94715 (+) 810 WP_080029902.1 bifunctional DNA-formamidopyrimidine glycosylase/DNA-(apurinic or apyrimidinic site) lyase -
  Eco28_RS00435 (Eco28_00086) coaD 94754..95233 (-) 480 WP_001171873.1 pantetheine-phosphate adenylyltransferase -
  Eco28_RS00440 (Eco28_00087) waaA 95241..96518 (-) 1278 WP_000891562.1 lipid IV(A) 3-deoxy-D-manno-octulosonic acid transferase -
  Eco28_RS00445 (Eco28_00089) rfaQ 96931..97989 (+) 1059 WP_000360402.1 lipopolysaccharide core heptosyltransferase RfaQ -

Sequence

Protein


Download         Length: 222 a.a.        Molecular weight: 25288.37 Da        Isoelectric Point: 7.9748

>NTDB_id=182303 Eco28_RS00415 WP_033815110.1 92499..93167(+) (radC) [Escherichia coli strain DSM 103246]
MKNNAQLLMPREKMLKFGISTLTDVELLALFLRTGTRGKDVLTLAKEMLENFGSLYGLLTSEYEQFSGVHGIGVAKFAQL
KGIAELARRYYNVRMREESPLLSPEMTREFLQSQLTGEEREIFMVIFLDSQHRVITHSRLFSGTLNHVEVHPREIIREAI
KINASALILAHNHPSGCAEPSKADKLITERIIKSCQFMDLRVLDHIVIGRGEYVSFAERGWI

Nucleotide


Download         Length: 669 bp        

>NTDB_id=182303 Eco28_RS00415 WP_033815110.1 92499..93167(+) (radC) [Escherichia coli strain DSM 103246]
GTGAAAAACAATGCACAGCTGTTGATGCCGCGCGAAAAAATGCTGAAGTTTGGTATTAGCACCTTAACGGATGTCGAGCT
GCTGGCGCTATTTCTGCGTACCGGAACGCGCGGTAAAGATGTATTAACCCTGGCAAAAGAGATGCTGGAGAATTTCGGCT
CTCTTTATGGCTTGTTAACCTCTGAATATGAACAATTTAGTGGTGTTCATGGAATTGGCGTAGCGAAATTTGCCCAGTTA
AAGGGGATTGCTGAACTGGCGCGGCGTTACTACAACGTGCGGATGCGTGAAGAAAGCCCTTTACTCAGCCCGGAGATGAC
GCGGGAATTTTTACAAAGCCAGCTCACGGGTGAGGAGCGGGAGATCTTTATGGTGATCTTTCTCGACTCACAACACCGGG
TTATAACGCATAGCCGTCTTTTTTCCGGCACGCTAAACCATGTTGAAGTCCATCCTCGGGAAATTATCCGCGAAGCGATA
AAAATAAACGCCTCGGCGCTGATCCTTGCACATAATCACCCTTCGGGTTGTGCTGAACCCAGTAAAGCGGATAAACTCAT
TACTGAACGGATAATAAAGAGTTGTCAGTTCATGGATTTACGCGTGCTCGACCATATCGTGATTGGGCGTGGAGAGTATG
TTTCTTTTGCCGAACGCGGCTGGATTTAA

Domains

Predicted by InterProScan.

RadC-like JAB domain (RadC)

(103-220)

UPF0758 N-terminal (UPF0758_N)

(9-77)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radC Haemophilus influenzae Rd KW20

49.099

100

0.491